Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-148/megassr/results/hub_GCF_060301295.1/fasta/hub_GCF_060301295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              529
Total size of examined sequences (bp):           6230450
Total number of identified SSRs:                 54
Number of SSR containing sequences:              44
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	6
4	1
5	14
6	32

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
GC	-	-	-	1														1
CAC	-	-	2															2
CCG	-	-	1															1
CGC	-	-	1															1
CGG	-	-	1															1
GCG	-	-	1															1
CTGG	-																1	1
ACGGC	1																	1
CCTGG	1																	1
CGCCG	1																	1
CGGCG	1																	1
GCCAG	1																	1
GCCGC	1																	1
GCGCC	1																	1
GCGCT	1																	1
GCGGC	1																	1
GGCGA	1																	1
GGCGC	1																	1
GGTGG	1																	1
TCAGC					1													1
TGCCG	1																	1
ATGGCC	1																	1
CAGCGC		1																1
CAGGCC	1																	1
CAGGCG	1																	1
CCAGCA	1																	1
CCAGCG	1																	1
CCAGGG	1																	1
CCGACG	1																	1
CCGAGC				1							1							2
CCTCGG	1																	1
CCTGCT	1																	1
CCTGGG	1																	1
CGCCCT	1																	1
CGCTGG	1																	1
CGCTGT	1																	1
CGGCGC		1																1
CGTCGG		1																1
CGTGAT								1										1
CGTGGT		1																1
GCAGGC	1																	1
GCCCAG			1															1
GCCTGC	1																	1
GCCTGG	1																	1
GGAAGG	1																	1
GGCCTT	1																	1
GGCGGT	1																	1
GGGCCA	1																	1
TCGGCG	1																	1
TGGCTG										1								1
TGTCCG		1																1
TGTTCC	1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
CG/CG	-	-	-	1														1
ACC/GGT	-	-	2															2
CCG/CGG	-	-	4															4
AGCC/CTGG	-																1	1
ACCCC/GGGGT	1																	1
ACGGC/CCGTG	2																	2
AGCGC/CGCTG	1																	1
AGCTC/AGCTG					1													1
AGGCC/CCTGG	2																	2
AGGCG/CCTCG	1																	1
CCGCG/CGCGG	6																	6
AACAGG/CCTGTT	1																	1
AAGGCC/CCTTGG	1																	1
AAGGGG/CCCCTT	1																	1
ACACGG/CCGTGT		1																1
ACAGCC/CTGTGG										1								1
ACAGCG/CGCTGT	1																	1
ACCACG/CGTGGT		1																1
ACCAGC/CTGGTG	1																	1
ACCGCC/CGGTGG	1																	1
ACGATC/ATCGTG								1										1
ACGCCG/CGGCGT	2	1																3
AGCAGG/CCTGCT	1																	1
AGCCCG/CGGGCT				1							1							2
AGCGCC/CGCTGG	2	1																3
AGGCCC/CCTGGG	3		1															4
AGGCCG/CCTCGG	1																	1
AGGCGC/CCTGCG	3																	3
AGGGCC/CCCTGG	2																	2
AGGGCG/CCCTCG	1																	1
ATGGCC/ATGGCC	1																	1
CCGGCG/CCGGCG		1																1
