Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-106/megassr/results/hub_GCF_059803375.1/fasta/hub_GCF_059803375.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              16
Total size of examined sequences (bp):           2717408
Total number of identified SSRs:                 11
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
TCA	-	-	1	1
AAGAA	1			1
GAAAA	1			1
TCTTG	1			1
ATTTTT	1			1
GCATCA	1			1
GCATCG	1			1
GCTACG	1			1
TCGGCA	1	1		2
TGAATT	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
ATC/ATG	-	-	1	1
AAAAG/CTTTT	2			2
AAGAC/CTTGT	1			1
AAAAAT/ATTTTT	1			1
AAATTC/AATTTG	1			1
ACGGCT/AGCCGT	1			1
AGCATC/ATGCTG	1			1
ATCGGC/ATGCCG	2	1		3
