Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-117/megassr/results/hub_GCF_059694465.1/fasta/hub_GCF_059694465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              182
Total size of examined sequences (bp):           4675274
Total number of identified SSRs:                 35
Number of SSR containing sequences:              24
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	5
3	9
4	1
5	11
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																																																		1	2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1																																												1	2
AT	-	-	-	1																																																																	1
CG	-	-	-	2																																																																	2
CT	-	-	-			1																																																															1
TC	-	-	-	1																																																																	1
CAG	-	-	1																																																																		1
CCG	-	-	2																																																																		2
CCT	-	-	1																																																																		1
CGT	-	-	1																																																																		1
GCT	-	-	1																																																																		1
GGC	-	-	3																																																																		3
TTTC	-	1																																																																			1
AACAA	1																																																																				1
ACGTC	1																																																																				1
CCTTC	1																																																																				1
CGCGC	1																																																																				1
CTCCC	1																																																																				1
CTCTT	1																																																																				1
GCGCG	1																																																																				1
GGGAG	1																																																																				1
TCTCT	1																																																																				1
TCTTT	1																																																																				1
TTTCT	1																																																																				1
AGGGAA	1																																																																				1
CGACTT	1																																																																				1
CTGGCG	1																																																																				1
GAAAGG	1																																																																				1
GCGCCA	1																																																																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						1																																												2	4
AG/CT	-	-	-	1		1																																																															2
AT/AT	-	-	-	1																																																																	1
CG/CG	-	-	-	2																																																																	2
ACG/CGT	-	-	1																																																																		1
AGC/CTG	-	-	2																																																																		2
AGG/CCT	-	-	1																																																																		1
CCG/CGG	-	-	5																																																																		5
AAAG/CTTT	-	1																																																																			1
AAAAC/GTTTT	1																																																																				1
AAAAG/CTTTT	2																																																																				2
AAGAG/CTCTT	2																																																																				2
AAGGG/CCCTT	1																																																																				1
ACGTC/ACGTG	1																																																																				1
AGGGG/CCCCT	2																																																																				2
CCGCG/CGCGG	2																																																																				2
AAAGGG/CCCTTT	2																																																																				2
AAGTCG/ACTTCG	1																																																																				1
AGCGCC/CGCTGG	2																																																																				2
