Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-116/megassr/results/hub_GCF_059694365.1/fasta/hub_GCF_059694365.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              80
Total size of examined sequences (bp):           4668338
Total number of identified SSRs:                 28
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
2	5
3	8
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1			1		1																									1																																																										4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																				1																																								2	3
CA	-	-	-	1																																																																																																										1
CG	-	-	-	2																																																																																																										2
GC	-	-	-	1	1																																																																																																									2
CAG	-	-	1																																																																																																											1
CCG	-	-	2																																																																																																											2
CGT	-	-		1																																																																																																										1
GGC	-	-	3																																																																																																											3
GGT	-	-	1																																																																																																											1
CACGC	1																																																																																																													1
CGCGC	1																																																																																																													1
GGCGC	1																																																																																																													1
AACCAA						1																																																																																																								1
CGACTT	1																																																																																																													1
CTGGCG	1																																																																																																													1
GACACT		1																																																																																																												1
GCGCCA	1																																																																																																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1			1		1																									1																	1																																								2	7
AC/GT	-	-	-	1																																																																																																										1
CG/CG	-	-	-	3	1																																																																																																									4
ACC/GGT	-	-	1																																																																																																											1
ACG/CGT	-	-		1																																																																																																										1
AGC/CTG	-	-	1																																																																																																											1
CCG/CGG	-	-	5																																																																																																											5
ACGCC/CGTGG	1																																																																																																													1
CCGCG/CGCGG	2																																																																																																													2
AAAACC/GGTTTT						1																																																																																																								1
AAGTCG/ACTTCG	1																																																																																																													1
ACACTG/AGTGTC		1																																																																																																												1
AGCGCC/CGCTGG	2																																																																																																													2
