Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-141/megassr/results/hub_GCF_058688835.1/fasta/hub_GCF_058688835.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              89
Total size of examined sequences (bp):           4919031
Total number of identified SSRs:                 25
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	1
3	7
4	1
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																										1					1	2
TA	-	-	-	1																																													1
ACG	-	-		1																																													1
CGC	-	-	1		1																																												2
CTG	-	-	1																																														1
GCC	-	-	1																																														1
GCG	-	-	1																																														1
GCT	-	-	1																																														1
AATC	-	1																																															1
AACAC			1																																														1
ACCAG	1																																																1
CACGC	1																																																1
CGCCA								1																																									1
CGCCC	1																																																1
CGCGC	1																																																1
GCGCG	1																																																1
CGACTT	1																																																1
CGCCAG	1																																																1
CTGGTT	1																																																1
GCATGA		1																																															1
GCGCCA	1																																																1
TCAGGT	1																																																1
TCGCTT	1																																																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																										1					1	2
AT/AT	-	-	-	1																																													1
ACG/CGT	-	-		1																																													1
AGC/CTG	-	-	2																																														2
CCG/CGG	-	-	3		1																																												4
AATC/ATTG	-	1																																															1
AACAC/GTGTT			1																																														1
ACCAG/CTGGT	1																																																1
ACGCC/CGTGG	1							1																																									2
CCCCG/CGGGG	1																																																1
CCGCG/CGCGG	2																																																2
AAAGCG/CGCTTT	1																																																1
AACCAG/CTGGTT	1																																																1
AACCTG/AGGTTC	1																																																1
AAGTCG/ACTTCG	1																																																1
AGCATG/ATGCTC		1																																															1
AGCGCC/CGCTGG	2																																																2
