Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-140/megassr/results/hub_GCF_058688755.1/fasta/hub_GCF_058688755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              118
Total size of examined sequences (bp):           5051450
Total number of identified SSRs:                 24
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	3	3
ACG	-	-		1	1
CGC	-	-	1	1	2
CTG	-	-	1		1
GCG	-	-	1		1
GCT	-	-	1		1
GGC	-	-	1		1
AACAC	1				1
CAGGG	1				1
CGCCC	1				1
CGCGC	1				1
CTGGT	1				1
GCGTG	1				1
TCTTC		1			1
AACCAG	1				1
AAGCGA	1				1
ATAAAA	1				1
CGACTT	1				1
CGCCAG	1				1
GCGCCA	1				1
TCAGGT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	3	3
ACG/CGT	-	-		1	1
AGC/CTG	-	-	2		2
CCG/CGG	-	-	3	1	4
AACAC/GTGTT	1				1
AAGAG/CTCTT		1			1
ACCAG/CTGGT	1				1
ACGCC/CGTGG	1				1
AGGGC/CCCTG	1				1
CCCCG/CGGGG	1				1
CCGCG/CGCGG	1				1
AAAAAT/ATTTTT	1				1
AAAGCG/CGCTTT	1				1
AACCAG/CTGGTT	1				1
AACCTG/AGGTTC	1				1
AAGTCG/ACTTCG	1				1
AGCGCC/CGCTGG	2				2
