Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-138/megassr/results/hub_GCF_058688715.1/fasta/hub_GCF_058688715.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              110
Total size of examined sequences (bp):           5022795
Total number of identified SSRs:                 26
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	3
3	7
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1					1	2
CG	-	-	-	3																					3
ACG	-	-		1																					1
CAG	-	-	1																						1
CGC	-	-	1																						1
CTG	-	-	1																						1
GCC	-	-	1																						1
GCG	-	-	1	1																					2
ACCAG	1																								1
AGAGA		1																							1
CAGGG	1																								1
CGCCC	1																								1
GCGCG	1																								1
GCGTG	1																								1
GTGTT	1																								1
AACCAG	1																								1
ATAAAA	1																								1
CGACTT	1																								1
CGCCAG	1																								1
GAACCT	1																								1
TCGCTT	1																								1
TGGCGC	1																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1					1	2
CG/CG	-	-	-	3																					3
ACG/CGT	-	-		1																					1
AGC/CTG	-	-	2																						2
CCG/CGG	-	-	3	1																					4
AACAC/GTGTT	1																								1
AAGAG/CTCTT		1																							1
ACCAG/CTGGT	1																								1
ACGCC/CGTGG	1																								1
AGGGC/CCCTG	1																								1
CCCCG/CGGGG	1																								1
CCGCG/CGCGG	1																								1
AAAAAT/ATTTTT	1																								1
AAAGCG/CGCTTT	1																								1
AACCAG/CTGGTT	1																								1
AACCTG/AGGTTC	1																								1
AAGTCG/ACTTCG	1																								1
AGCGCC/CGCTGG	2																								2
