Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-136/megassr/results/hub_GCF_058688635.1/fasta/hub_GCF_058688635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              536
Total size of examined sequences (bp):           5064012
Total number of identified SSRs:                 26
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	3
3	7
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1		1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
CG	-	-	-	3																			3
CAG	-	-	2																				2
CGC	-	-	1	1																			2
CGT	-	-		1																			1
GCC	-	-	2																				2
AACAC	1																						1
AGAGA		1																					1
CTGGT	1																						1
GCCCT	1																						1
GCGCG	1																						1
GCGTG	1																						1
GGGCG	1																						1
ATAAAA	1																						1
CGACTT	1																						1
CGCCAG	1																						1
CTGGTT	1																						1
GAACCT	1																						1
TCGCTT	1																						1
TGGCGC	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1	2
CG/CG	-	-	-	3																			3
ACG/CGT	-	-		1																			1
AGC/CTG	-	-	2																				2
CCG/CGG	-	-	3	1																			4
AACAC/GTGTT	1																						1
AAGAG/CTCTT		1																					1
ACCAG/CTGGT	1																						1
ACGCC/CGTGG	1																						1
AGGGC/CCCTG	1																						1
CCCCG/CGGGG	1																						1
CCGCG/CGCGG	1																						1
AAAAAT/ATTTTT	1																						1
AAAGCG/CGCTTT	1																						1
AACCAG/CTGGTT	1																						1
AACCTG/AGGTTC	1																						1
AAGTCG/ACTTCG	1																						1
AGCGCC/CGCTGG	2																						2
