Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-131/megassr/results/hub_GCF_058688415.1/fasta/hub_GCF_058688415.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              110
Total size of examined sequences (bp):           5018266
Total number of identified SSRs:                 26
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	3
3	7
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	2
CG	-	-	-	3															3
CGT	-	-		1															1
CTG	-	-	1																1
GCC	-	-	2																2
GCG	-	-		1															1
GCT	-	-	1																1
GGC	-	-	1																1
CGCCC	1																		1
CGCGC	1																		1
CTGGT	1																		1
GCCCT	1																		1
GCGTG	1																		1
GTGTT	1																		1
TCTTC		1																	1
AACCAG	1																		1
AAGCGA	1																		1
CGCCAG	1																		1
GAAGTC	1																		1
TCAGGT	1																		1
TGGCGC	1																		1
TTTTTA	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	2
CG/CG	-	-	-	3															3
ACG/CGT	-	-		1															1
AGC/CTG	-	-	2																2
CCG/CGG	-	-	3	1															4
AACAC/GTGTT	1																		1
AAGAG/CTCTT		1																	1
ACCAG/CTGGT	1																		1
ACGCC/CGTGG	1																		1
AGGGC/CCCTG	1																		1
CCCCG/CGGGG	1																		1
CCGCG/CGCGG	1																		1
AAAAAT/ATTTTT	1																		1
AAAGCG/CGCTTT	1																		1
AACCAG/CTGGTT	1																		1
AACCTG/AGGTTC	1																		1
AAGTCG/ACTTCG	1																		1
AGCGCC/CGCTGG	2																		2
