Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-126/megassr/results/hub_GCF_058688255.1/fasta/hub_GCF_058688255.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              78
Total size of examined sequences (bp):           5756811
Total number of identified SSRs:                 44
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	4
3	18
4	1
5	10
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1																																																						1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1									1																																																1	3
CG	-	-	-	2	1																																																																							3
GC	-	-	-	1																																																																								1
CCG	-	-	4																																																																									4
CGC	-	-	2																																																																									2
CGG	-	-	2	1																																																																								3
CTG	-	-	1																																																																									1
GCA	-	-	2																																																																									2
GCC	-	-	2																																																																									2
GGC	-	-		1																																																																								1
GGT	-	-	1																																																																									1
GTC	-	-	1																																																																									1
TCG	-	-	1																																																																									1
CTGG	-	1																																																																										1
AATAA	1																																																																											1
CCCGG	1																																																																											1
CCCTG	1																																																																											1
CCGCG	1																																																																											1
CGCGC	1																																																																											1
CGTGG	1																																																																											1
CTGGT	1																																																																											1
GGCGC	2																																																																											2
TTTAT	1																																																																											1
CACCAG	1																																																																											1
CCGGAG		1																																																																										1
CTCACC		1																																																																										1
GAAGTC	1																																																																											1
GATGAA			1																																																																									1
GTGGAA	1																																																																											1
TCTTCG	1																																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1				1					1																																																1	4
CG/CG	-	-	-	3	1																																																																							4
ACC/GGT	-	-	1																																																																									1
ACG/CGT	-	-	2																																																																									2
AGC/CTG	-	-	3																																																																									3
CCG/CGG	-	-	10	2																																																																								12
AGCC/CTGG	-	1																																																																										1
AAAAT/ATTTT	2																																																																											2
ACCAG/CTGGT	1																																																																											1
ACGCC/CGTGG	1																																																																											1
AGGGC/CCCTG	1																																																																											1
CCCGG/CCGGG	1																																																																											1
CCGCG/CGCGG	4																																																																											4
AAGACG/CGTCTT	1																																																																											1
AAGATG/ATCTTC			1																																																																									1
AAGTCG/ACTTCG	1																																																																											1
AAGTGG/ACTTCC	1																																																																											1
ACCAGC/CTGGTG	1																																																																											1
ACCCTC/AGGGTG		1																																																																										1
AGCCGG/CCGGCT		1																																																																										1
