Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-104/megassr/results/hub_GCF_058688195.1/fasta/hub_GCF_058688195.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              75
Total size of examined sequences (bp):           5839924
Total number of identified SSRs:                 63
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    12


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	11
2	5
3	21
4	7
5	10
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1																																									1
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-								2																			1	1																4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1																																							1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			2					1																																		1	5
CG	-	-	-	3	1																																																								4
GC	-	-	-	1																																																									1
CAG	-	-	1																																																										1
CCA	-	-	1																																																										1
CCG	-	-	2																																																										2
CGC	-	-	1	1																																																									2
CGG	-	-	6																																																										6
GAC	-	-	1																																																										1
GCA	-	-	2																																																										2
GCC	-	-	2	1																																																									3
GGC	-	-	2																																																										2
GTC	-	-	1																																																										1
AAAG	-	2							1	1																																																			4
AAGA	-	1																																																											1
AAGG	-					1																																																							1
CCAG	-	1																																																											1
AATAA	1																																																												1
ACCAG	1																																																												1
CCACG	1																																																												1
CCCGG	2																																																												2
CCCTG	1																																																												1
CGCGG	1																																																												1
GGCGC	2																																																												2
TTTAT	1																																																												1
CTGGTG	1																																																												1
CTTCAT			1					1																																																					2
GAAGTC	1																																																												1
GACGAA	1																																																												1
GCTCCG		1																																																											1
GTGAGG		2																																																											2
GTGGAA	1																																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1	2					1																																		1	6
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1			2																			1	1																5
CG/CG	-	-	-	4	1																																																								5
ACC/GGT	-	-	1																																																										1
ACG/CGT	-	-	2																																																										2
AGC/CTG	-	-	3																																																										3
CCG/CGG	-	-	13	2																																																									15
AAAG/CTTT	-	3							1	1																																																			5
AAGG/CCTT	-					1																																																							1
AGCC/CTGG	-	1																																																											1
AAAAT/ATTTT	2																																																												2
ACCAG/CTGGT	1																																																												1
ACGCC/CGTGG	1																																																												1
AGGGC/CCCTG	1																																																												1
CCCGG/CCGGG	2																																																												2
CCGCG/CGCGG	3																																																												3
AAGACG/CGTCTT	1																																																												1
AAGATG/ATCTTC			1					1																																																					2
AAGTCG/ACTTCG	1																																																												1
AAGTGG/ACTTCC	1																																																												1
ACCAGC/CTGGTG	1																																																												1
ACCCTC/AGGGTG		2																																																											2
AGCCGG/CCGGCT		1																																																											1
