Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-103/megassr/results/hub_GCF_058688175.1/fasta/hub_GCF_058688175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              64
Total size of examined sequences (bp):           5498215
Total number of identified SSRs:                 45
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	5
3	18
4	1
5	8
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1																																																							1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1								1																																															1	1	4
CG	-	-	-	2	1																																																																						3
GC	-	-	-	1																																																																							1
TA	-	-	-	1																																																																							1
CAG	-	-	1																																																																								1
CCA	-	-	1																																																																								1
CCG	-	-	3																																																																								3
CGC	-	-	2																																																																								2
CGG	-	-	2																																																																								2
CTG	-	-	2																																																																								2
GCA	-	-	1																																																																								1
GCC	-	-	1	1																																																																							2
GCG	-	-	1																																																																								1
GGC	-	-	1																																																																								1
GGT	-	-	1																																																																								1
GTC	-	-	1																																																																								1
GATT	-	1																																																																									1
AATAA	1																																																																										1
ATAAA	1																																																																										1
CGCCG	1																																																																										1
CGCGG	1																																																																										1
CGTGG	1																																																																										1
CTGGT	1																																																																										1
GGCGC	2																																																																										2
ACAAAT	1																																																																										1
CCGGAG		1																																																																									1
CTCACT		1																																																																									1
CTGCTC	1																																																																										1
CTGGTG	1																																																																										1
GAAGTC	1																																																																										1
GACGAA	1																																																																										1
GTGGAA	1																																																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1						1																																															1	1	5
AT/AT	-	-	-	1																																																																							1
CG/CG	-	-	-	3	1																																																																						4
ACC/GGT	-	-	2																																																																								2
ACG/CGT	-	-	1																																																																								1
AGC/CTG	-	-	4																																																																								4
CCG/CGG	-	-	10	1																																																																							11
AATC/ATTG	-	1																																																																									1
AAAAT/ATTTT	2																																																																										2
ACCAG/CTGGT	1																																																																										1
ACGCC/CGTGG	1																																																																										1
CCGCG/CGCGG	4																																																																										4
AAATAC/ATTTGT	1																																																																										1
AAGACG/CGTCTT	1																																																																										1
AAGTCG/ACTTCG	1																																																																										1
AAGTGG/ACTTCC	1																																																																										1
ACCAGC/CTGGTG	1																																																																										1
ACTCTC/AGAGTG		1																																																																									1
AGCAGG/CCTGCT	1																																																																										1
AGCCGG/CCGGCT		1																																																																									1
