Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-101/megassr/results/hub_GCF_058688075.1/fasta/hub_GCF_058688075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              85
Total size of examined sequences (bp):           5689184
Total number of identified SSRs:                 60
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  16
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	9
3	21
4	2
5	10
6	17

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
CG	-	-	-	3	2																		5
GA	-	-	-	1																			1
GC	-	-	-	3																			3
CAG	-	-	1																				1
CCA	-	-	1																				1
CCG	-	-	3																				3
CGA	-	-	1																				1
CGC	-	-	3	1																			4
CGG	-	-	2	1																			3
GAC	-	-	1																				1
GCA	-	-	2																				2
GCC	-	-	2																				2
GCT	-	-	1																				1
GGC	-	-	1																				1
GGT	-	-	1																				1
CCAG	-	1																					1
TTTG	-	1																					1
AATTA	1																						1
ACCAG	1																						1
CGCGC	1																						1
CGCGG	2																						2
CGTGG	1																						1
GCGCG		1																					1
GCGGC	1																						1
GGCGC	1																						1
TCCCC	1																						1
AGCTGC	1																						1
CACCAG	1																						1
CAGCGC	1																						1
CAGCTC	1																						1
CCCTGA	1																						1
CCGGAG		1																					1
CTGACG	1																						1
GAAGTC	1																						1
GACCAT		1																					1
GACGAA	1																						1
GAGTCA	1																						1
GAGTCG		1																					1
GGCGAT	1																						1
GGGCGT	1																						1
GTCGGA	1																						1
TCATCC	1																						1
TCTTCA			1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
AG/CT	-	-	-	1																			1
CG/CG	-	-	-	6	2																		8
ACC/GGT	-	-	2																				2
ACG/CGT	-	-	2																				2
AGC/CTG	-	-	4																				4
CCG/CGG	-	-	11	2																			13
AAAC/GTTT	-	1																					1
AGCC/CTGG	-	1																					1
AAATT/AATTT	1																						1
ACCAG/CTGGT	1																						1
ACGCC/CGTGG	1																						1
AGGGG/CCCCT	1																						1
CCGCG/CGCGG	5	1																					6
AAGACG/CGTCTT	1																						1
AAGATG/ATCTTC			1																				1
AAGTCG/ACTTCG	1																						1
ACCAGC/CTGGTG	1																						1
ACCATG/ATGGTC		1																					1
ACCCTG/AGGGTC	1																						1
ACGCCC/CGTGGG	1																						1
ACGCTG/AGCGTC	1																						1
ACTCCG/AGTCGG	1	1																					2
ACTCTG/AGAGTC	1																						1
AGCCGG/CCGGCT		1																					1
AGCGCC/CGCTGG	1																						1
AGCTCC/AGCTGG	1																						1
AGCTGC/AGCTGC	1																						1
AGGATG/ATCCTC	1																						1
ATCGCC/ATGGCG	1																						1
