Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-100/megassr/results/hub_GCF_058688055.1/fasta/hub_GCF_058688055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              82
Total size of examined sequences (bp):           5717882
Total number of identified SSRs:                 67
Number of SSR containing sequences:              27
Number of sequences containing more than 1 SSR:  18
Number of SSRs present in compound formation:    8


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	10
3	15
4	1
5	15
6	21

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1									1			1								1			1	5
CG	-	-	-	4	2																																										6
GC	-	-	-	3																																											3
TC	-	-	-	1																																											1
CAC	-	-	1																																												1
CAG	-	-	1																																												1
CCG	-	-	2																																												2
CGA	-	-	1																																												1
CGC	-	-	1	1																																											2
CGG	-	-	1	1																																											2
CTG	-	-	1																																												1
GCA	-	-	1																																												1
GCG	-	-		1																																											1
GGC	-	-	3																																												3
CTGG	-	1																																													1
CCACG	1																																														1
CGCGC	1																																														1
CGCGG	2																																														2
CTGGT	1																																														1
GCGCC	1																																														1
GCGCG	1																																														1
GGGGA	1																																														1
TTCTA	3					1						1																																			5
TTCTG	1		1																																												2
ACGCCC	1																																														1
AGCTGC	1																																														1
ATGGTC	1																																														1
CACCAG					1																																										1
CAGCTC	1																																														1
CCAGGC	1																																														1
CCCTGA	1																																														1
CCGACG		1																																													1
CGACTC		1	1																																												2
CTGGTG	1																																														1
GAAGTC	1																																														1
GACGAA	1																																														1
GACTCC	1																																														1
GCACCG	1																																														1
GCGCTG	1																																														1
GCTCCG		1																																													1
GGCGAT	1																																														1
TCTTGT	1																																														1
TGGCGC	1																																														1
TTCCAC	1																																														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1									1			1								1			1	5
AG/CT	-	-	-	1																																											1
CG/CG	-	-	-	7	2																																										9
ACC/GGT	-	-	1																																												1
ACG/CGT	-	-	1																																												1
AGC/CTG	-	-	3																																												3
CCG/CGG	-	-	7	3																																											10
AGCC/CTGG	-	1																																													1
AACAG/CTGTT	1		1																																												2
AATAG/ATTCT	3					1						1																																			5
ACCAG/CTGGT	1																																														1
ACGCC/CGTGG	1																																														1
AGGGG/CCCCT	1																																														1
CCGCG/CGCGG	5																																														5
AACAAG/CTTGTT	1																																														1
AAGACG/CGTCTT	1																																														1
AAGTCG/ACTTCG	1																																														1
AAGTGG/ACTTCC	1																																														1
ACCAGC/CTGGTG	1				1																																										2
ACCATG/ATGGTC	1																																														1
ACCCTG/AGGGTC	1																																														1
ACCGGC/CCGGTG	1																																														1
ACGCCC/CGTGGG	1																																														1
ACGCCG/CGGCGT		1																																													1
ACTCCG/AGTCGG	1	1	1																																												3
AGCCGG/CCGGCT		1																																													1
AGCGCC/CGCTGG	2																																														2
AGCTCC/AGCTGG	1																																														1
AGCTGC/AGCTGC	1																																														1
AGGCCC/CCTGGG	1																																														1
ATCGCC/ATGGCG	1																																														1
