Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-98/megassr/results/hub_GCF_058688005.1/fasta/hub_GCF_058688005.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              115
Total size of examined sequences (bp):           6315577
Total number of identified SSRs:                 55
Number of SSR containing sequences:              28
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	25
4	2
5	5
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	3	1				4
GC	-	-	-	4					4
AGC	-	-	1	1					2
CAC	-	-	1						1
CAG	-	-	1						1
CCG	-	-	4						4
CGA	-	-	1						1
CGC	-	-	1	1					2
CGG	-	-	3						3
CTG	-	-	4						4
GCA	-	-	1						1
GCG	-	-	2						2
GGC	-	-	3						3
GGT	-	-	1						1
AGCC	-	1							1
AGTA	-			1					1
ACGCC	1								1
CGCGC	1								1
CTGGT	1								1
GCGCT	1								1
GGCGC	1								1
ATCCTT			1						1
ATGTTC								1	1
ATTATG	1								1
CAGAGA				1					1
CAGCGC	1								1
CCAGCA	1								1
CGACTT	1								1
GCGCTG	1								1
GCTGGC	2								2
GCTGGT	1								1
GTTGAA	1								1
TCAGAG			1						1
TCATCC	1								1
TCCGAC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	7	1				8
ACC/GGT	-	-	2						2
ACG/CGT	-	-	1						1
AGC/CTG	-	-	7	1					8
CCG/CGG	-	-	13	1					14
AAGT/ACTT	-			1					1
AGCC/CTGG	-	1							1
ACCAG/CTGGT	1								1
ACGCC/CGTGG	1								1
AGCGC/CGCTG	1								1
CCGCG/CGCGG	2								2
AACATG/ATGTTC								1	1
AACTTC/AAGTTG	1								1
AAGGAT/ATCCTT			1						1
AAGTCG/ACTTCG	1								1
AATCAT/ATGATT	1								1
ACAGAG/CTCTGT				1					1
ACCAGC/CTGGTG	2								2
ACTCCG/AGTCGG	1								1
ACTCTG/AGAGTC			1						1
AGCGCC/CGCTGG	4								4
AGGATG/ATCCTC	1								1
