Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-96/megassr/results/hub_GCF_058687805.1/fasta/hub_GCF_058687805.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              97
Total size of examined sequences (bp):           6184155
Total number of identified SSRs:                 45
Number of SSR containing sequences:              30
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	18
5	7
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	2	1	1	4
GC	-	-	-		1		1
TA	-	-	-	1			1
ACG	-	-	1				1
CAC	-	-	1				1
CAG	-	-	4				4
CCG	-	-	1				1
CGC	-	-	1				1
CGG	-	-	1				1
CTG	-	-	2				2
GCA	-	-	2				2
GCG	-	-	1				1
GTC	-	-	1				1
TCA	-	-	1				1
TGA	-	-	1				1
TGC	-	-	1				1
ATTTC	1						1
CAGCG	1						1
CTGGT	1						1
GCCAG	1						1
GCGCG	1						1
TCTTC		1					1
TTTGT	1						1
CAGACG	1						1
CAGCGC	1						1
CCGGGA	1						1
CGACTT	1						1
CGCCAG	2						2
GCACCT		1					1
GCTGGC	1						1
GCTGGT		1					1
GGAAGG			1				1
GTTGCT	1						1
TCCTGT			1				1
TGCTCT	1						1
TGGTGC			1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	2	2	1	5
ACC/GGT	-	-	1				1
ACG/CGT	-	-	2				2
AGC/CTG	-	-	9				9
ATC/ATG	-	-	2				2
CCG/CGG	-	-	4				4
AAAAC/GTTTT	1						1
AAATG/ATTTC	1						1
AAGAG/CTCTT		1					1
ACCAG/CTGGT	1						1
AGCGC/CGCTG	1						1
AGGCC/CCTGG	1						1
CCGCG/CGCGG	1						1
AACAGC/CTGTTG	1						1
AACAGG/CCTGTT			1				1
AAGAGC/CTCTTG	1						1
AAGGGG/CCCCTT			1				1
AAGTCG/ACTTCG	1						1
ACCAGC/CTGGTG		1	1				2
ACCGGG/CCCGGT	1						1
ACCTGC/AGGTGC		1					1
ACGCAG/CGTCTG	1						1
AGCGCC/CGCTGG	4						4
