Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCF_058315285.1/fasta/hub_GCF_058315285.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           5337377
Total number of identified SSRs:                 38
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	17
5	5
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
CA	-	-	-			1																1
CG	-	-	-	3																		3
GC	-	-	-	1																		1
CAG	-	-	1																			1
CCA	-	-	1																			1
CCG	-	-	3																			3
CGC	-	-	1																			1
CGG	-	-	2																			2
CTG	-	-	2																			2
GAC	-	-	1																			1
GCA	-	-	1																			1
GCC	-	-	2	1																		3
GGC	-	-	1																			1
TGC	-	-	1																			1
AATAA	1																					1
CCACG	1																					1
CCCGG	1																					1
CCGCG	1																					1
GGCGC	1																					1
AGACCG	1																					1
CGGTAT	1																					1
CTGCTC																					1	1
CTGGTG	1																					1
GAAGTC	1																					1
GCGCTG		1																				1
GCTCCG		1																				1
GGCCAG	1																					1
GTGGAA	1																					1
TCTTCG	1																					1
TGCTGG		1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
AC/GT	-	-	-			1																1
CG/CG	-	-	-	4																		4
ACC/GGT	-	-	1																			1
ACG/CGT	-	-	1																			1
AGC/CTG	-	-	5																			5
CCG/CGG	-	-	9	1																		10
AAAAT/ATTTT	1																					1
ACGCC/CGTGG	1																					1
CCCGG/CCGGG	1																					1
CCGCG/CGCGG	2																					2
AAGACG/CGTCTT	1																					1
AAGTCG/ACTTCG	1																					1
AAGTGG/ACTTCC	1																					1
ACCAGC/CTGGTG	1	1																				2
ACCGAG/CGGTCT	1																					1
ACCGAT/ATCGGT	1																					1
AGCAGG/CCTGCT																					1	1
AGCCGG/CCGGCT		1																				1
AGCGCC/CGCTGG		1																				1
AGGGCC/CCCTGG	1																					1
