Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-138/megassr/results/hub_GCF_057215325.1/fasta/hub_GCF_057215325.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              17
Total size of examined sequences (bp):           1515835
Total number of identified SSRs:                 24
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	6
4	1
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT	-	-	-	2					2
TA	-	-	-		1				1
ATA	-	-			1				1
ATT	-	-	2						2
CTG	-	-	1						1
GCA	-	-	1						1
TTC	-	-						1	1
AATT	-	1							1
AAAAT	1								1
ATAAA	1								1
ATAAT	1								1
ATATA	1								1
ATTCT	1								1
TAATT		1							1
TTCTG	1								1
AAAAAT	1								1
ATATTT					1				1
ATTGTT	1								1
ATTTTT	1								1
TAAAAG	1								1
TAGGCT	1								1
TCAGTT	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	2	1				3
AAG/CTT	-	-						1	1
AAT/ATT	-	-	2		1				3
AGC/CTG	-	-	2						2
AATT/AATT	-	1							1
AAAAT/ATTTT	2								2
AAATT/AATTT		1							1
AACAG/CTGTT	1								1
AATAG/ATTCT	1								1
AATAT/ATATT	2								2
AAAAAT/ATTTTT	2								2
AAAAGT/ACTTTT	1								1
AAACTG/AGTTTC	1								1
AAATAT/ATATTT					1				1
AACAAT/ATTGTT	1								1
AAGCCT/AGGCTT	1								1
