Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-128/megassr/results/hub_GCF_056856535.1/fasta/hub_GCF_056856535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           7838155
Total number of identified SSRs:                 160
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	50
3	28
4	3
5	36
6	43

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	24	2	1								27
GC	-	-	-	22	1									23
ACG	-	-	1											1
CAG	-	-	2											2
CCG	-	-	2	1										3
CGC	-	-	5											5
CGG	-	-	3	2										5
GCC	-	-	2	1										3
GCG	-	-	6	1										7
GCT	-	-											1	1
TCA	-	-	1											1
CGGC	-	1												1
GCCG	-	2												2
ACGCA			1											1
ACGCG	1													1
CCCGC	2													2
CCGCG	1													1
CGATG	1													1
CGCGC	11													11
CGGCG	2													2
GCCGG	1													1
GCGCC	1													1
GCGCG	9													9
GCGGC	4													4
GGCGC	1													1
TCGCG	1													1
ACCCGA	1													1
ATCGGC	1	1												2
CACGAC								1						1
CAGTCG	1													1
CCACGG	1													1
CCGGCG	1													1
CCGGGC	1													1
CGAGCG	1													1
CGCCGG	1													1
CGCGAG	1													1
CGCGAT	1													1
CGGCAA	1													1
CTCGAC	1													1
GCACCT		1												1
GCCGGT		1												1
GCGCCG	1													1
GCGCGA	1													1
GGCAAT					1									1
GGCCGC	1													1
GGCGGT	1													1
GGCGTC	1													1
GTCGAC	4													4
GTGGAA		1												1
TCGACC	12													12
TCGATG	1													1
TGACCT	1													1
TGATCG		1												1
TTCGGC	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	46	3	1								50
ACG/CGT	-	-	1											1
AGC/CTG	-	-	2										1	3
ATC/ATG	-	-	1											1
CCG/CGG	-	-	18	5										23
CCGG/CCGG	-	3												3
AACGC/CGTTG			1											1
ACGCG/CGCGT	2													2
ATCGC/ATGCG	1													1
CCCCG/CGGGG	2													2
CCCGG/CCGGG	1													1
CCGCG/CGCGG	29													29
AACCCG/CGGGTT	1													1
AACGGC/CCGTTG	1													1
AAGCCG/CGGCTT	1													1
AAGGTC/ACCTTG	1													1
AAGTGG/ACTTCC		1												1
AATGGC/ATTGCC					1									1
ACATCG/ATGTCG	1													1
ACCACG/CGTGGT								1						1
ACCGCC/CGGTGG	1													1
ACCGGC/CCGGTG		1												1
ACCTCG/AGGTCG	13													13
ACCTGC/AGGTGC		1												1
ACGATC/ATCGTG		1												1
ACGCCG/CGGCGT	1													1
ACGGCC/CCGTGG	1													1
ACGTCG/ACGTCG	4													4
ACTGCG/AGTCGC	1													1
AGCGCG/CGCGCT	3													3
ATCGCG/ATCGCG	1													1
ATCGGC/ATGCCG	1	1												2
CCCGGG/CCCGGG	1													1
CCGCGG/CCGCGG	1													1
CCGGCG/CCGGCG	3													3
