Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-127/megassr/results/hub_GCF_056782435.1/fasta/hub_GCF_056782435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1724312
Total number of identified SSRs:                 10
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-			1	1
ATT	-	-	1				1
CTA	-	-	1				1
GCA	-	-	1				1
AATAT	1						1
TGTCA	1						1
AAGAAA	1						1
GTAGAA		1					1
TTCGGC		1					1
TTGATT	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-			1	1
AAT/ATT	-	-	1				1
ACT/AGT	-	-	1				1
AGC/CTG	-	-	1				1
AATAT/ATATT	1						1
ACATG/ATGTC	1						1
AAAAAG/CTTTTT	1						1
AAAATC/ATTTTG	1						1
AAGCCG/CGGCTT		1					1
AAGTAG/ACTTCT		1					1
