Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-126/megassr/results/hub_GCF_056782415.1/fasta/hub_GCF_056782415.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1724004
Total number of identified SSRs:                 8
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	2
5	3
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CTA	-	-	1									1
GCA	-	-	1									1
AATAT	1											1
TGCTG											1	1
TGTCA	1											1
AAGAAA	1											1
GTAGAA		1										1
TTGATT	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
ACT/AGT	-	-	1									1
AGC/CTG	-	-	1									1
AATAT/ATATT	1											1
ACAGC/CTGTG											1	1
ACATG/ATGTC	1											1
AAAAAG/CTTTTT	1											1
AAAATC/ATTTTG	1											1
AAGTAG/ACTTCT		1										1
