Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-94/megassr/results/hub_GCF_056749145.1/fasta/hub_GCF_056749145.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              111
Total size of examined sequences (bp):           6470989
Total number of identified SSRs:                 23
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
3	1
5	4
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																											1	1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																																											1
GCA	-	-	1																																																										1
CGGCG	1																																																												1
CGGGC		1																																																											1
GGAAG	1																																																												1
TCTTC		1																																																											1
AGATCA	1																																																												1
ATGGCC	1																																																												1
CAGAGC	1																																																												1
CAGCAA																				1																																									1
CCGGCG	1																																																												1
CGTGAT				1																																																									1
GCAAGA			1																																																										1
GGCCTG	1																																																												1
GGCGCT	1																																																												1
GGGCCT	1																																																												1
GTGGGT			1																																																										1
TCTTGA	2																																																												2
TGCTGG	1																																																												1
TGGCGC	1																																																												1
TTGCCC	1																																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																																										1	2
AGC/CTG	-	-	1																																																										1
AAGAG/CTCTT		1																																																											1
AAGGG/CCCTT	1																																																												1
CCCGG/CCGGG		1																																																											1
CCGCG/CGCGG	1																																																												1
AACAGC/CTGTTG																				1																																									1
AAGAGC/CTCTTG			1																																																										1
AAGATC/ATCTTG	3																																																												3
AAGGGC/CCCTTG	1																																																												1
ACACCC/GGGTGT			1																																																										1
ACCAGC/CTGGTG	1																																																												1
ACGATC/ATCGTG				1																																																									1
AGAGCC/CTCTGG	1																																																												1
AGCGCC/CGCTGG	2																																																												2
AGGCCC/CCTGGG	2																																																												2
ATGGCC/ATGGCC	1																																																												1
CCGGCG/CCGGCG	1																																																												1
