Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-125/megassr/results/hub_GCF_056521565.1/fasta/hub_GCF_056521565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           4913851
Total number of identified SSRs:                 24
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
4	1
5	2
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	2				2
GC	-	-	-	1				1
CAG	-	-	1					1
CCG	-	-	2					2
CGA	-	-	1					1
GCC	-	-	1					1
GTT	-	-	1					1
TGA	-	-	1					1
CAGT	-	1						1
CACAC	1							1
CGTCG	1							1
ACCATT	1							1
ACCGTT							1	1
CAATAT	1							1
CTGAAG	1							1
CTGGCG	1							1
GAAGTC	1							1
GCGCCA	1							1
GCTCCG	1							1
GCTGCC	1							1
GGTTCA	1							1
TTTTTA					1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	3				3
AAC/GTT	-	-	1					1
ACG/CGT	-	-	1					1
AGC/CTG	-	-	1					1
ATC/ATG	-	-	1					1
CCG/CGG	-	-	3					3
ACTG/AGTC	-	1						1
ACACC/GGTGT	1							1
ACGCG/CGCGT	1							1
AAAAAT/ATTTTT					1			1
AACCTG/AGGTTC	1							1
AACGGT/ACCGTT							1	1
AAGCTG/AGCTTC	1							1
AAGTCG/ACTTCG	1							1
AATATC/ATATTG	1							1
AATGGT/ACCATT	1							1
AGCCGG/CCGGCT	1							1
AGCGCC/CGCTGG	2							2
AGCGGC/CCGCTG	1							1
