Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-124/megassr/results/hub_GCF_056521505.1/fasta/hub_GCF_056521505.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              31
Total size of examined sequences (bp):           5038112
Total number of identified SSRs:                 20
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
5	4
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
AT	-	-	-		1																		1
GT	-	-	-	1																			1
TA	-	-	-	1																			1
ACC	-	-	1																				1
CAC	-	-	1																				1
CAG	-	-	1																				1
AAACG	1																						1
AAGAT		1																					1
GAGCG	1																						1
GCTTT	1																						1
AGAGCC															1								1
CAACAG												1											1
GCCAGA																						1	1
GCTCAC	1																						1
GGTGAC	1																						1
GTATCA			1																				1
TATATC	1																						1
TCAATG	1																						1
TCTGTA																					1		1
TTTTAT	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
AC/GT	-	-	-	1																			1
AT/AT	-	-	-	1	1																		2
ACC/GGT	-	-	2																				2
AGC/CTG	-	-	1																				1
AAACG/CGTTT	1																						1
AAAGC/CTTTG	1																						1
AAGAT/ATCTT		1																					1
AGCGG/CCGCT	1																						1
AAAAAT/ATTTTT	1																						1
AACAGC/CTGTTG												1											1
AATGTC/ACATTG	1																						1
ACAGAT/ATCTGT																					1		1
ACCGTC/ACGGTG	1																						1
ACGCTC/AGCGTG	1																						1
ACTGAT/AGTATC			1																				1
AGAGCC/CTCTGG															1							1	2
AGATAT/ATATCT	1																						1
