Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-139/megassr/results/hub_GCF_054901875.1/fasta/hub_GCF_054901875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           4692710
Total number of identified SSRs:                 24
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
4	1
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	3							3
GC	-	-	-	2							2
CGG	-	-	1								1
CTG	-	-		1							1
GCA	-	-								1	1
GCC	-	-	1								1
GCG	-	-	1								1
GCT	-	-	1								1
TGG	-	-	1								1
GCCA	-	1									1
ACGTT	1										1
CGCGG	1										1
GCGCC	1										1
GCGCG	1										1
ACCGAG		1									1
CGGCTT	1										1
CTGGCG	1										1
GAAGTC	1										1
GCCAGC	1										1
GCGATG	1										1
TGGTCG								1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	5							5
ACC/GGT	-	-	1								1
AGC/CTG	-	-	1	1						1	3
CCG/CGG	-	-	3								3
AGCC/CTGG	-	1									1
AACGT/ACGTT	1										1
CCGCG/CGCGG	3										3
AAGCCG/CGGCTT	1										1
AAGTCG/ACTTCG	1										1
ACCACG/CGTGGT								1			1
ACCGAG/CGGTCT		1									1
AGCGCC/CGCTGG	2										2
ATCGCC/ATGGCG	1										1
