Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-136/megassr/results/hub_GCF_054901795.1/fasta/hub_GCF_054901795.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           4811583
Total number of identified SSRs:                 22
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	9
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	2							2
GC	-	-	-	2							2
CGC	-	-	1								1
CGG	-	-	2	1							3
GCA	-	-					1				1
GCC	-	-	1								1
GCG	-	-	2								2
GCT	-	-	1								1
ATTTA	1										1
CGCGC	1										1
GCGCC	1										1
GCGCG	1										1
CTGGCG	1										1
GAAGTC	1										1
GCGATA	1										1
TCAATC	1										1
TGGTCG										1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	4							4
AGC/CTG	-	-	1				1				2
CCG/CGG	-	-	6	1							7
AAATT/AATTT	1										1
CCGCG/CGCGG	3										3
AAGTCG/ACTTCG	1										1
AATCTC/AGATTG	1										1
ACCACG/CGTGGT										1	1
AGCGAT/ATCGCT	1										1
AGCGCC/CGCTGG	1										1
