Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-119/megassr/results/hub_GCF_054719905.1/fasta/hub_GCF_054719905.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           6333021
Total number of identified SSRs:                 33
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	4
4	3
5	6
6	18

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-	1				1
GC	-	-	-	1				1
ATC	-	-		1				1
CAG	-	-	1					1
GGT	-	-	1					1
TGA	-	-	1					1
AATG	-	1						1
CCAA	-	1						1
TGGC	-	1						1
ATTCA	1							1
CAGCA	1							1
CCAAA	1							1
CGCCG	1							1
GGCGC	1							1
GTTCC	1							1
AAGGCC	1							1
ACACCA			1					1
ACAGCA		1						1
ACCTGC	1							1
ACTGGT					1			1
CAGGTG							1	1
CATCTG						1		1
CCCGAG	1							1
CCTGAG		1						1
CTGCAC		1						1
CTGGCA		1						1
GAGCCA	1							1
GATCAA		1						1
GCCAAA		1						1
GGCAAA	1							1
GGCTCC	1							1
GGGAGA			1					1
GGTGGC	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	1				1
CG/CG	-	-	-	1				1
ACC/GGT	-	-	1					1
AGC/CTG	-	-	1					1
ATC/ATG	-	-	1	1				2
AACC/GGTT	-	1						1
AATG/ATTC	-	1						1
AGCC/CTGG	-	1						1
AAACC/GGTTT	1							1
AACGG/CCGTT	1							1
AATTC/AATTG	1							1
ACAGC/CTGTG	1							1
CCGCG/CGCGG	2							2
AAAGCC/CTTTGG		1						1
AAAGGC/CCTTTG	1							1
AACACC/GGTGTT			1					1
AACAGC/CTGTTG		1						1
AAGATC/ATCTTG		1						1
AAGGCC/CCTTGG	1							1
ACCAGT/ACTGGT					1			1
ACCGCC/CGGTGG	1							1
ACCTGC/AGGTGC	1	1					1	3
ACTGGC/AGTGCC		1						1
AGAGCC/CTCTGG	1							1
AGAGGG/CCCTCT			1					1
AGATGC/ATCTGC						1		1
AGCCCG/CGGGCT	1							1
AGCCGG/CCGGCT	1							1
AGCCTG/AGGCTC		1						1
