Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-136/megassr/results/hub_GCF_054719885.1/fasta/hub_GCF_054719885.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           6252925
Total number of identified SSRs:                 42
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    12


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	4
4	3
5	4
6	29

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	1	1
TA	-	-	-	1	1
ATG	-	-		1	1
CCA	-	-	1		1
CTG	-	-	1		1
TGA	-	-	1		1
AATG	-	1			1
AGCC	-	1			1
TTGG	-	1			1
CGCGG	1				1
GCGCC	1				1
TGAAT	1				1
TGGTT		1			1
ACAACG	1				1
ACCTGC			1		1
CAGGCT		1			1
CCAGTA	1		2		3
CCAGTG	1	2			3
CCTCTC				1	1
CGCCAC	1				1
CTTGAT		1			1
GAGCCG	3				3
GCAGGT		1			1
GCTCGG	1				1
GGCCTT	1				1
GGTCAT	1				1
GTACCA			3		3
TCTGGC	1				1
TGCAGG	1				1
TGCCGG	1				1
TGCTGT		1			1
TGGCTT	1				1
TGGTGT			1		1
TTGCCT		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	1	1
ACC/GGT	-	-	1		1
AGC/CTG	-	-	1		1
ATC/ATG	-	-	1	1	2
AACC/GGTT	-	1			1
AATG/ATTC	-	1			1
AGCC/CTGG	-	1			1
AAACC/GGTTT		1			1
AATTC/AATTG	1				1
CCGCG/CGCGG	2				2
AAAGCC/CTTTGG	1				1
AAAGGC/CCTTTG		1			1
AACACC/GGTGTT			1		1
AACAGC/CTGTTG		1			1
AACGAC/CGTTGT	1				1
AAGATC/ATCTTG		1			1
AAGGCC/CCTTGG	1				1
ACCAGT/ACTGGT	1		5		6
ACCATG/ATGGTC	1				1
ACCGCC/CGGTGG	1				1
ACCGGC/CCGGTG	1				1
ACCTGC/AGGTGC	1	1	1		3
ACTGGC/AGTGCC	1	2			3
AGAGCC/CTCTGG	1				1
AGAGGG/CCCTCT				1	1
AGCCCG/CGGGCT	1				1
AGCCGG/CCGGCT	3				3
AGCCTG/AGGCTC		1			1
