Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-135/megassr/results/hub_GCF_054719785.1/fasta/hub_GCF_054719785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           6224352
Total number of identified SSRs:                 36
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	4
4	3
5	7
6	20

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	1					1
TA	-	-	-	1					1
ATG	-	-		1					1
CCA	-	-	1						1
CTG	-	-	1						1
TGA	-	-	1						1
AATG	-	1							1
AGCC	-	1							1
TTGG	-	1							1
CGCGG	1								1
GCGCC	1								1
GGAAC	2								2
TGAAT	1								1
TGCTG	1								1
TGGTT	1								1
ACCTGC								1	1
ATGCTT		1							1
CAGATG				1					1
CAGGCT		1							1
CCAGTG		1							1
CCTCTC			1						1
CGCCAC	1								1
CTTGAT		1							1
GAGCCG	1								1
GCAGGT		1							1
GCTCGG	1								1
GGCCTT	1								1
GGCGAT	1								1
GTACCA					1				1
TCTGGC	1								1
TGCAGG	1								1
TGCTGT		1							1
TGGCTT		1							1
TGGTGT			1						1
TTGCCT	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	1					1
CG/CG	-	-	-	1					1
ACC/GGT	-	-	1						1
AGC/CTG	-	-	1						1
ATC/ATG	-	-	1	1					2
AACC/GGTT	-	1							1
AATG/ATTC	-	1							1
AGCC/CTGG	-	1							1
AAACC/GGTTT	1								1
AACGG/CCGTT	2								2
AATTC/AATTG	1								1
ACAGC/CTGTG	1								1
CCGCG/CGCGG	2								2
AAAGCC/CTTTGG		1							1
AAAGGC/CCTTTG	1								1
AACACC/GGTGTT			1						1
AACAGC/CTGTTG		1							1
AAGATC/ATCTTG		1							1
AAGCAT/ATGCTT		1							1
AAGGCC/CCTTGG	1								1
ACCAGT/ACTGGT					1				1
ACCGCC/CGGTGG	1								1
ACCTGC/AGGTGC	1	1						1	3
ACTGGC/AGTGCC		1							1
AGAGCC/CTCTGG	1								1
AGAGGG/CCCTCT			1						1
AGATGC/ATCTGC				1					1
AGCCCG/CGGGCT	1								1
AGCCGG/CCGGCT	1								1
AGCCTG/AGGCTC		1							1
ATCGCC/ATGGCG	1								1
