Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-104/megassr/results/hub_GCF_054456575.1/fasta/hub_GCF_054456575.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              50
Total size of examined sequences (bp):           6020216
Total number of identified SSRs:                 32
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1
5	4
6	23

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
CG	-	-	-	2															2
GC	-	-	-	1															1
TA	-	-	-	1															1
CAT	-	-	1																1
CGGCA	1																		1
GCGCC	2																		2
GCGGC	1																		1
AAAATC		1																	1
AAAGCC	1				1														2
AAAGTC	1																		1
AAGATC																		1	1
AAGCCA	1																		1
AGATCA			1																1
AGCCAA		1																	1
AGCGGC	1																		1
ATCAAG							1												1
CAACAG	1																		1
CCTGCA			1																1
CTTCGC	1																		1
GCCAGA	1																		1
GCTTTG	1																		1
GGCCTT	1																		1
GGTGCA						1													1
TCAAGA							1												1
TCTTGA	1																		1
TTGATC	2			1															3
TTGGGA	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AT/AT	-	-	-	1															1
CG/CG	-	-	-	3															3
ATC/ATG	-	-	1																1
ACGGC/CCGTG	1																		1
CCGCG/CGCGG	3																		3
AAAATC/ATTTTG		1																	1
AAAGCC/CTTTGG	3	1			1														5
AAAGTC/ACTTTG	1																		1
AACAGC/CTGTTG	1																		1
AAGATC/ATCTTG	3		1	1			2											1	8
AAGGCC/CCTTGG	1																		1
AAGGCG/CCTTCG	1																		1
AATCCC/ATTGGG	1																		1
ACCTGC/AGGTGC			1			1													2
AGAGCC/CTCTGG	1																		1
AGCGGC/CCGCTG	1																		1
