Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCF_054381735.1/fasta/hub_GCF_054381735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              66
Total size of examined sequences (bp):           4794960
Total number of identified SSRs:                 15
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	5
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
GC	-	-	-	2		1	3
GT	-	-	-	1			1
CCG	-	-	1				1
CGT	-	-		1			1
CTG	-	-	1				1
GCG	-	-	1				1
GGC	-	-	1				1
GCGCC	1						1
GCGTG	1						1
CCCGCA	1						1
CGCCAG	1						1
GAAGTC	1						1
GCTGGC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AC/GT	-	-	-	1			1
CG/CG	-	-	-	2		1	3
ACG/CGT	-	-		1			1
AGC/CTG	-	-	1				1
CCG/CGG	-	-	3				3
ACGCC/CGTGG	1						1
CCGCG/CGCGG	1						1
AAGTCG/ACTTCG	1						1
ACCCGC/CGGGTG	1						1
AGCGCC/CGCTGG	2						2
