Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-121/megassr/results/hub_GCF_054381715.1/fasta/hub_GCF_054381715.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              70
Total size of examined sequences (bp):           4767863
Total number of identified SSRs:                 23
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	4
4	1
5	1
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	4	4
GC	-	-	-	4	4
TA	-	-	-	1	1
CGG	-	-	2		2
CTG	-	-	1		1
GGC	-	-	1		1
GCTG	-	1			1
TGGCG	1				1
ATGGTC	1				1
CAAACT	1				1
CCTGAG	1				1
CGACTT	1				1
CTGGCG	1				1
GCCAGC	1				1
GCGATG	1				1
GTGGCT		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	8	8
AGC/CTG	-	-	1		1
CCG/CGG	-	-	3		3
AGCC/CTGG	-	1			1
ACGCC/CGTGG	1				1
AAACTC/AGTTTG	1				1
AAGTCG/ACTTCG	1				1
ACAGCC/CTGTGG		1			1
ACCATG/ATGGTC	1				1
AGCCTG/AGGCTC	1				1
AGCGCC/CGCTGG	2				2
ATCGCC/ATGGCG	1				1
