Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-133/megassr/results/hub_GCF_054381695.1/fasta/hub_GCF_054381695.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              46
Total size of examined sequences (bp):           4907882
Total number of identified SSRs:                 16
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
4	1
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	2					2
GC	-	-	-			1			1
CAG	-	-	1						1
CGG	-	-	1						1
GCA	-	-	1						1
GCTG	-	1							1
CCCGC	1								1
CCTTC								1	1
GGCGC	1								1
CACCAG		1							1
CAGACG	1								1
GAAGTC	1								1
GCTGGC	1								1
GGCAGT	1								1
TGGTCA		1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	2		1			3
AGC/CTG	-	-	2						2
CCG/CGG	-	-	1						1
AGCC/CTGG	-	1							1
AAGGG/CCCTT								1	1
CCCCG/CGGGG	1								1
CCGCG/CGCGG	1								1
AAGTCG/ACTTCG	1								1
ACCAGC/CTGGTG		1							1
ACCATG/ATGGTC		1							1
ACGCAG/CGTCTG	1								1
ACTGCC/AGTGGC	1								1
AGCGCC/CGCTGG	1								1
