Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-132/megassr/results/hub_GCF_054381675.1/fasta/hub_GCF_054381675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              31
Total size of examined sequences (bp):           4905795
Total number of identified SSRs:                 16
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	5
5	1
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	1			1
GC	-	-	-	2	1		3
ACG	-	-		1			1
CGG	-	-	1				1
CTG	-	-	1				1
GCA	-	-	2				2
TCCTC	1						1
ACCATG			1				1
CAGACG	1						1
CTCCGG	1						1
GAAGTC	1						1
GCTGGC	1						1
GTTATG						1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	3	1		4
ACG/CGT	-	-		1			1
AGC/CTG	-	-	3				3
CCG/CGG	-	-	1				1
AGAGG/CCTCT	1						1
AACCAT/ATGGTT						1	1
AAGTCG/ACTTCG	1						1
ACCATG/ATGGTC			1				1
ACGCAG/CGTCTG	1						1
AGCCGG/CCGGCT	1						1
AGCGCC/CGCTGG	1						1
