Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-131/megassr/results/hub_GCF_054381655.1/fasta/hub_GCF_054381655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              48
Total size of examined sequences (bp):           4840494
Total number of identified SSRs:                 12
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	4
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-			1	1
CGG	-	-	1				1
CTG	-	-	2				2
AACAC	1						1
CAGGA	1						1
CCTTC				1			1
GCGCC	1						1
ACCATG						1	1
CAGACG	1						1
GAAGTC	1						1
GCTGGC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-			1	1
AGC/CTG	-	-	2				2
CCG/CGG	-	-	1				1
AACAC/GTGTT	1						1
AAGGG/CCCTT				1			1
ACAGG/CCTGT	1						1
CCGCG/CGCGG	1						1
AAGTCG/ACTTCG	1						1
ACCATG/ATGGTC						1	1
ACGCAG/CGTCTG	1						1
AGCGCC/CGCTGG	1						1
