Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-146/megassr/results/hub_GCF_054219035.1/fasta/hub_GCF_054219035.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              71
Total size of examined sequences (bp):           4966974
Total number of identified SSRs:                 26
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	2
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	3				3
GC	-	-	-	2				2
TA	-	-	-	1				1
AGC	-	-	1					1
CGG	-	-	1					1
CTG	-	-	1					1
GCC	-	-	1					1
GCG	-	-	3					3
GCCA	-	1						1
TATT	-	1						1
ATATT	1							1
CGCGC	1							1
CGCTG	1							1
GGCGC	1							1
CAACCA	1							1
CGACTT	1							1
CTGGCG	1							1
GAACCC	1							1
GCCAGC	1							1
TCTCGG		1						1
TTGCCC							1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	1				1
CG/CG	-	-	-	5				5
AGC/CTG	-	-	2					2
CCG/CGG	-	-	5					5
AAAT/ATTT	-	1						1
AGCC/CTGG	-	1						1
AATAT/ATATT	1							1
AGCGC/CGCTG	1							1
CCGCG/CGCGG	2							2
AACCAC/GGTTGT	1							1
AACCCG/CGGGTT	1							1
AAGGGC/CCCTTG							1	1
AAGTCG/ACTTCG	1							1
ACCGAG/CGGTCT		1						1
AGCGCC/CGCTGG	2							2
