Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-118/megassr/results/hub_GCF_053891735.1/fasta/hub_GCF_053891735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           5175407
Total number of identified SSRs:                 25
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	6
4	1
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
CG	-	-	-	3																							3
GC	-	-	-	2											1												3
AGC	-	-	1																								1
CAG	-	-	1																								1
CCG	-	-	1																								1
CGA	-	-	1																								1
GCG	-	-	1																								1
TGC	-	-	1																								1
GTTG	-						1																				1
CCAGA	1																										1
CGCCA																	1										1
GCCGT	1																										1
GCTGC	1																										1
CACGAG					1																						1
CCCTAA	1																										1
CGGTGG	1																										1
GAAGTC	1																										1
GCAGGA																										1	1
GCGCCA	1																										1
GGTAGG		1																									1
TAAAAC	1																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
CG/CG	-	-	-	5											1												6
ACG/CGT	-	-	1																								1
AGC/CTG	-	-	3																								3
CCG/CGG	-	-	2																								2
AACC/GGTT	-						1																				1
ACCAG/CTGGT	1																										1
ACGCC/CGTGG																	1										1
ACGGC/CCGTG	1																										1
AGCGC/CGCTG	1																										1
AAAACT/AGTTTT	1																										1
AACCCT/AGGGTT	1																										1
AAGTCG/ACTTCG	1																										1
ACCCCT/AGGGGT		1																									1
ACCGCC/CGGTGG	1																										1
ACGAGC/CGTGCT					1																						1
AGCAGG/CCTGCT																										1	1
AGCGCC/CGCTGG	1																										1
