Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-116/megassr/results/hub_GCF_053891575.1/fasta/hub_GCF_053891575.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           4760161
Total number of identified SSRs:                 20
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	4
4	1
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	4	4
GC	-	-	-	3	3
CAG	-	-	1		1
CCG	-	-	2		2
CGG	-	-	1		1
CCAG	-	1			1
AGAAA	1				1
GCCGG	1				1
CCGGCA	1				1
CTGGCG	1				1
GAAGTC	1				1
GCGATG	1				1
GCGCCA	1				1
GCTTTA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	7	7
AGC/CTG	-	-	1		1
CCG/CGG	-	-	3		3
AGCC/CTGG	-	1			1
AAAAG/CTTTT	1				1
CCCGG/CCGGG	1				1
AAAGCT/AGCTTT	1				1
AAGTCG/ACTTCG	1				1
ACCGGC/CCGGTG	1				1
AGCGCC/CGCTGG	2				2
ATCGCC/ATGGCG	1				1
