Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-115/megassr/results/hub_GCF_053891555.1/fasta/hub_GCF_053891555.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              44
Total size of examined sequences (bp):           4657560
Total number of identified SSRs:                 21
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	4
4	1
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
CG	-	-	-	4	4
GC	-	-	-	3	3
CGG	-	-	2		2
CTG	-	-	1		1
GGC	-	-	1		1
GCTG	-	1			1
CCGAA				1	1
CGCCA	1				1
CCATCG	1				1
CCTGAG			1		1
CTGGCG	1				1
GAAGTC	1				1
GAGGGT	1				1
GCGCCA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	7	7
AGC/CTG	-	-	1		1
CCG/CGG	-	-	3		3
AGCC/CTGG	-	1			1
AACCG/CGGTT				1	1
ACGCC/CGTGG	1				1
AAGTCG/ACTTCG	1				1
ACCCTC/AGGGTG	1				1
AGCCTG/AGGCTC			1		1
AGCGCC/CGCTGG	2				2
ATCGCC/ATGGCG	1				1
