Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-119/megassr/results/hub_GCF_053891535.1/fasta/hub_GCF_053891535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           5465136
Total number of identified SSRs:                 20
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	8
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	1	1
GC	-	-	-	2	2
CGC	-	-	1		1
CGG	-	-	1		1
CGT	-	-		1	1
CTG	-	-	1		1
GCG	-	-	1		1
GGC	-	-	2		2
GTG	-	-	1		1
ACGTC	1				1
CACGC	1				1
GCGCG	1				1
GGCGC	1				1
CAGCCG	1				1
CGACTT	1				1
CTGGCG	1				1
GCTGGC	1				1
TTCCTC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	3	3
ACC/GGT	-	-	1		1
ACG/CGT	-	-		1	1
AGC/CTG	-	-	1		1
CCG/CGG	-	-	5		5
ACGCC/CGTGG	1				1
ACGTC/ACGTG	1				1
CCGCG/CGCGG	2				2
AAGAGG/CCTCTT	1				1
AAGTCG/ACTTCG	1				1
AGCCGC/CGGCTG	1				1
AGCGCC/CGCTGG	2				2
