Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-118/megassr/results/hub_GCF_053891515.1/fasta/hub_GCF_053891515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              27
Total size of examined sequences (bp):           4699445
Total number of identified SSRs:                 19
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	9
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	1	1
GC	-	-	-	2	2
ACG	-	-		1	1
CCG	-	-	3		3
CGC	-	-	1		1
CTG	-	-	1		1
GCC	-	-	1		1
GGC	-	-	1		1
TAT	-	-	1		1
CGCGC	1				1
GCGTG	1				1
GGCGC	1				1
CACCTG			1		1
CAGCCG	1				1
CGACTT	1				1
GCTGGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	3	3
AAT/ATT	-	-	1		1
ACG/CGT	-	-		1	1
AGC/CTG	-	-	1		1
CCG/CGG	-	-	6		6
ACGCC/CGTGG	1				1
CCGCG/CGCGG	2				2
AAGTCG/ACTTCG	1				1
ACCTGC/AGGTGC			1		1
AGCCGC/CGGCTG	1				1
AGCGCC/CGCTGG	1				1
