Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-147/megassr/results/hub_GCF_053847565.1/fasta/hub_GCF_053847565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              187
Total size of examined sequences (bp):           6640413
Total number of identified SSRs:                 63
Number of SSR containing sequences:              42
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	10
2	1
3	10
4	1
5	13
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1			1	1											1																																															1																																								1	6
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1																																																																	1				1																																		4
GC	-	-	-	1																																																																																																																							1
AGA	-	-	1																																																																																																																								1
CAC	-	-	1																																																																																																																								1
CGC	-	-	2																																																																																																																								2
CGG	-	-	2																																																																																																																								2
GCG	-	-	2																																																																																																																								2
GTG	-	-	1	1																																																																																																																							2
CTGG	-	1																																																																																																																									1
CCCCT	1																																																																																																																										1
CGCCG	4																																																																																																																										4
CGGCG	1																																																																																																																										1
CTCGC	1																																																																																																																										1
GAGGG	1																																																																																																																										1
GCGCG	1																																																																																																																										1
GCGGC	1																																																																																																																										1
GGCGC	1																																																																																																																										1
GGTGG	1																																																																																																																										1
TGCGC	1																																																																																																																										1
AAGGCC	1																																																																																																																										1
ACCGCC	1																																																																																																																										1
AGCGCC	1																																																																																																																										1
ATGGCC	1																																																																																																																										1
CAACGC			1																																																																																																																								1
CAGGAA	1																																																																																																																										1
CAGGCG	1																																																																																																																										1
CCAGGG	1																																																																																																																										1
CCCCTT	1																																																																																																																										1
CCGAGC										1																																																																																																																	1
CCGAGG	1																																																																																																																										1
CCTGAC	1																																																																																																																										1
CGCCCT	1																																																																																																																										1
CGCCGA	1																																																																																																																										1
CGCTGG	1																																																																																																																										1
CGCTGT	1																																																																																																																										1
CGGCGC	1																																																																																																																										1
CGGGCT		1																																																																																																																									1
CGGTGG	1																																																																																																																										1
CGTGAT											1																																																																																																																1
CGTGTT		1																																																																																																																									1
CTGGCG	2																																																																																																																										2
GGCCCA	1																																																																																																																										1
GGCGCT	1																																																																																																																										1
TGCTGG		1																																																																																																																									1
TGGCTG										1																																																																																																																	1
TGTCCC	1																																																																																																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		2			1	1											1																																															1			1				1																																	1	10
CG/CG	-	-	-	1																																																																																																																							1
AAG/CTT	-	-	1																																																																																																																								1
ACC/GGT	-	-	2	1																																																																																																																							3
CCG/CGG	-	-	6																																																																																																																								6
AGCC/CTGG	-	1																																																																																																																									1
ACCCC/GGGGT	1																																																																																																																										1
AGCGC/CGCTG	1																																																																																																																										1
AGGCG/CCTCG	1																																																																																																																										1
AGGGG/CCCCT	2																																																																																																																										2
CCGCG/CGCGG	8																																																																																																																										8
AACACG/CGTGTT		1																																																																																																																									1
AACAGG/CCTGTT	1																																																																																																																										1
AACGCC/CGTTGG			1																																																																																																																								1
AAGGCC/CCTTGG	1																																																																																																																										1
AAGGGG/CCCCTT	1																																																																																																																										1
ACAGCC/CTGTGG										1																																																																																																																	1
ACAGCG/CGCTGT	1																																																																																																																										1
ACAGGG/CCCTGT	1																																																																																																																										1
ACCAGC/CTGGTG		1																																																																																																																									1
ACCCTG/AGGGTC	1																																																																																																																										1
ACCGCC/CGGTGG	2																																																																																																																										2
ACGATC/ATCGTG											1																																																																																																																1
ACGCCG/CGGCGT	1																																																																																																																										1
AGCCCG/CGGGCT		1								1																																																																																																																	2
AGCGCC/CGCTGG	5																																																																																																																										5
AGGCCC/CCTGGG	1																																																																																																																										1
AGGCCG/CCTCGG	1																																																																																																																										1
AGGCGC/CCTGCG	1																																																																																																																										1
AGGGCC/CCCTGG	1																																																																																																																										1
AGGGCG/CCCTCG	1																																																																																																																										1
ATGGCC/ATGGCC	1																																																																																																																										1
CCGGCG/CCGGCG	1																																																																																																																										1
