Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-146/megassr/results/hub_GCF_053847545.1/fasta/hub_GCF_053847545.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              219
Total size of examined sequences (bp):           6652531
Total number of identified SSRs:                 63
Number of SSR containing sequences:              38
Number of sequences containing more than 1 SSR:  17
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	12
2	1
3	10
4	1
5	11
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1				2					1		1		2														1	1						9
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1																														1	3
GC	-	-	-	1																																																1
AGA	-	-	1																																																	1
CAC	-	-	1																																																	1
CCG	-	-	1																																																	1
CGC	-	-	2																																																	2
CGG	-	-	1																																																	1
GCG	-	-	2																																																	2
GTG	-	-	1	1																																																2
GCCA	-	1																																																		1
CCACC	1																																																			1
CGCCG	3																																																			3
CGGCG	2																																																			2
GCGCG	1																																																			1
GCGGC	1																																																			1
GGCGA	1																																																			1
GGCGC	1																																																			1
TGCGC	1																																																			1
ACCGCC	1																																																			1
AGCGCC	1																																																			1
ATGGCC	1																																																			1
CAGGAA	1																																																			1
CCAGCG	1																																																			1
CCGAGC		1								1																																										2
CCGAGG	1																																																			1
CCTGAC	1																																																			1
CGCCCT	1																																																			1
CGCTGG	1																																																			1
CGCTGT	1																																																			1
CGGCGC	1																																																			1
CGGTGG	1																																																			1
CGTCGG	1																																																			1
CGTGAT											1																																									1
CGTGTT		1																																																		1
CTGGCG	1																																																			1
GAAGGG	1																																																			1
GCCCTG	1																																																			1
GCGCCA	1																																																			1
GCGCCT	1																																																			1
GGCCCA	1																																																			1
GGCCTT	1																																																			1
GGGACA	1																																																			1
GTTGGC			1																																																	1
TGCTGG		1																																																		1
TGGCTG			1																																																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1	1	2					1		1		2														1	1					1	12
CG/CG	-	-	-	1																																																1
AAG/CTT	-	-	1																																																	1
ACC/GGT	-	-	2	1																																																3
CCG/CGG	-	-	6																																																	6
AGCC/CTGG	-	1																																																		1
ACCCC/GGGGT	1																																																			1
AGCGC/CGCTG	1																																																			1
AGGCG/CCTCG	1																																																			1
CCGCG/CGCGG	8																																																			8
AACACG/CGTGTT		1																																																		1
AACAGG/CCTGTT	1																																																			1
AACGCC/CGTTGG			1																																																	1
AAGGCC/CCTTGG	1																																																			1
AAGGGG/CCCCTT	1																																																			1
ACAGCC/CTGTGG			1																																																	1
ACAGCG/CGCTGT	1																																																			1
ACAGGG/CCCTGT	1																																																			1
ACCAGC/CTGGTG		1																																																		1
ACCCTG/AGGGTC	1																																																			1
ACCGCC/CGGTGG	2																																																			2
ACGATC/ATCGTG											1																																									1
ACGCCG/CGGCGT	1																																																			1
AGCCCG/CGGGCT		1								1																																										2
AGCGCC/CGCTGG	5																																																			5
AGGCCC/CCTGGG	1																																																			1
AGGCCG/CCTCGG	1																																																			1
AGGCGC/CCTGCG	1																																																			1
AGGGCC/CCCTGG	1																																																			1
AGGGCG/CCCTCG	1																																																			1
ATGGCC/ATGGCC	1																																																			1
CCGGCG/CCGGCG	1																																																			1
