Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-145/megassr/results/hub_GCF_053847525.1/fasta/hub_GCF_053847525.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              175
Total size of examined sequences (bp):           6636309
Total number of identified SSRs:                 75
Number of SSR containing sequences:              43
Number of sequences containing more than 1 SSR:  21
Number of SSRs present in compound formation:    7


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	21
2	1
3	10
4	1
5	12
6	30

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	5					1		2		1	1				1		1	1																				1																																																									1			1														1	18
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-													1					1																											1																																																																					3
GC	-	-	-	1																																																																																																																															1
AGA	-	-	1																																																																																																																																1
CCG	-	-	1																																																																																																																																1
CGC	-	-	2																																																																																																																																2
CGG	-	-	1																																																																																																																																1
GCG	-	-	2																																																																																																																																2
GGT	-	-	1																																																																																																																																1
GTG	-	-	1	1																																																																																																																															2
CTGG	-	1																																																																																																																																	1
AAGAA	1																																																																																																																																		1
CAGCG	1																																																																																																																																		1
CGCCG	1																																																																																																																																		1
CGCGC	1																																																																																																																																		1
CGGCG	2																																																																																																																																		2
GCGGC	3																																																																																																																																		3
GGCGA	1																																																																																																																																		1
GGCGC	1																																																																																																																																		1
GGTGG	1																																																																																																																																		1
AAGGCC	1																																																																																																																																		1
ACAGCG	1																																																																																																																																		1
ACCGCC	1																																																																																																																																		1
AGCGCC	1																																																																																																																																		1
ATGGCC	1																																																																																																																																		1
CACGAA		1																																																																																																																																	1
CAGGAA	1																																																																																																																																		1
CCCCCT	1																																																																																																																																		1
CCCCTT	1																																																																																																																																		1
CCGAGC										1																																																																																																																									1
CCTCGG	1																																																																																																																																		1
CCTGAC	1																																																																																																																																		1
CGCCCT	1																																																																																																																																		1
CGCCGA	1																																																																																																																																		1
CGCTGG	1																																																																																																																																		1
CGGCGC	1																																																																																																																																		1
CGGGCT		1																																																																																																																																	1
CGGTGG	1																																																																																																																																		1
CGTGAT											1																																																																																																																								1
CTGGCG	1																																																																																																																																		1
GCCCTG	1																																																																																																																																		1
GCGCCA	1																																																																																																																																		1
GCGCCT	1																																																																																																																																		1
GGAGGG	1																																																																																																																																		1
GGCCCA	1																																																																																																																																		1
GGCGCT	1																																																																																																																																		1
GGGACA	1																																																																																																																																		1
GTTGGC			1																																																																																																																																1
TGCTGG		1																																																																																																																																	1
TGGCTG										1																																																																																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	5					1		2		1	1	1			1		2	1																				1						1																																																			1			1														1	21
CG/CG	-	-	-	1																																																																																																																															1
AAG/CTT	-	-	1																																																																																																																																1
ACC/GGT	-	-	2	1																																																																																																																															3
CCG/CGG	-	-	6																																																																																																																																6
AGCC/CTGG	-	1																																																																																																																																	1
AAAAG/CTTTT	1																																																																																																																																		1
ACCCC/GGGGT	1																																																																																																																																		1
AGCGC/CGCTG	1																																																																																																																																		1
AGGCG/CCTCG	1																																																																																																																																		1
CCGCG/CGCGG	8																																																																																																																																		8
AACACG/CGTGTT		1																																																																																																																																	1
AACAGG/CCTGTT	1																																																																																																																																		1
AACGCC/CGTTGG			1																																																																																																																																1
AAGGCC/CCTTGG	1																																																																																																																																		1
AAGGGG/CCCCTT	1																																																																																																																																		1
ACAGCC/CTGTGG										1																																																																																																																									1
ACAGCG/CGCTGT	1																																																																																																																																		1
ACAGGG/CCCTGT	1																																																																																																																																		1
ACCAGC/CTGGTG		1																																																																																																																																	1
ACCCTG/AGGGTC	1																																																																																																																																		1
ACCGCC/CGGTGG	2																																																																																																																																		2
ACGATC/ATCGTG											1																																																																																																																								1
ACGCCG/CGGCGT	1																																																																																																																																		1
AGCCCG/CGGGCT		1								1																																																																																																																									2
AGCGCC/CGCTGG	5																																																																																																																																		5
AGGCCC/CCTGGG	1																																																																																																																																		1
AGGCCG/CCTCGG	1																																																																																																																																		1
AGGCGC/CCTGCG	1																																																																																																																																		1
AGGGCC/CCCTGG	1																																																																																																																																		1
AGGGCG/CCCTCG	1																																																																																																																																		1
AGGGGG/CCCCCT	2																																																																																																																																		2
ATGGCC/ATGGCC	1																																																																																																																																		1
CCGGCG/CCGGCG	1																																																																																																																																		1
