Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-144/megassr/results/hub_GCF_053847495.1/fasta/hub_GCF_053847495.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              362
Total size of examined sequences (bp):           6631687
Total number of identified SSRs:                 57
Number of SSR containing sequences:              48
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	8
2	1
3	10
4	1
5	10
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1	1																														1																																						4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1		1																																																																				1	4
GC	-	-	-	1																																																																																								1
CAC	-	-	2	1																																																																																								3
CGC	-	-	2																																																																																									2
CGG	-	-	1																																																																																									1
CTT	-	-	1																																																																																									1
GCC	-	-	1																																																																																									1
GCG	-	-	2																																																																																									2
GCCA	-	1																																																																																										1
CAGCG	1																																																																																											1
CCACC	1																																																																																											1
CGCCG	1																																																																																											1
CGCGC	1																																																																																											1
CGGCG	1																																																																																											1
CTCGC	1																																																																																											1
GCGGC	3																																																																																											3
GTTTT	1																																																																																											1
AAGGCC	1																																																																																											1
ACAGCC										1																																																																																		1
AGCGCC	1																																																																																											1
ATCACG											1																																																																																	1
CAACGC			1																																																																																									1
CACGAA		1																																																																																										1
CAGGCG	1																																																																																											1
CCCCTT	1																																																																																											1
CCGAGC										1																																																																																		1
CCGAGG	1																																																																																											1
CCTGGG	1																																																																																											1
CGCCAC	1																																																																																											1
CGCCAG	1																																																																																											1
CGCCCT	1																																																																																											1
CGCTGT	1																																																																																											1
CGGGCT		1																																																																																										1
CGTCGG	1																																																																																											1
CTGGCG	1																																																																																											1
GCCCTG	1																																																																																											1
GCGCCA	1																																																																																											1
GGCCAT	1																																																																																											1
GGCGCT	1																																																																																											1
GGCGGT	1																																																																																											1
GGGACA	1																																																																																											1
GTCAGG	1																																																																																											1
TGCTGG		1																																																																																										1
TGTTCC	1																																																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1	1	2	1																														1																																					1	8
CG/CG	-	-	-	1																																																																																								1
AAG/CTT	-	-	1																																																																																									1
ACC/GGT	-	-	2	1																																																																																								3
CCG/CGG	-	-	6																																																																																									6
AGCC/CTGG	-	1																																																																																										1
AAAAC/GTTTT	1																																																																																											1
ACCCC/GGGGT	1																																																																																											1
AGCGC/CGCTG	1																																																																																											1
AGGCG/CCTCG	1																																																																																											1
CCGCG/CGCGG	6																																																																																											6
AACACG/CGTGTT		1																																																																																										1
AACAGG/CCTGTT	1																																																																																											1
AACGCC/CGTTGG			1																																																																																									1
AAGGCC/CCTTGG	1																																																																																											1
AAGGGG/CCCCTT	1																																																																																											1
ACAGCC/CTGTGG										1																																																																																		1
ACAGCG/CGCTGT	1																																																																																											1
ACAGGG/CCCTGT	1																																																																																											1
ACCAGC/CTGGTG		1																																																																																										1
ACCCTG/AGGGTC	1																																																																																											1
ACCGCC/CGGTGG	2																																																																																											2
ACGATC/ATCGTG											1																																																																																	1
ACGCCG/CGGCGT	1																																																																																											1
AGCCCG/CGGGCT		1								1																																																																																		2
AGCGCC/CGCTGG	5																																																																																											5
AGGCCC/CCTGGG	1																																																																																											1
AGGCCG/CCTCGG	1																																																																																											1
AGGCGC/CCTGCG	1																																																																																											1
AGGGCC/CCCTGG	1																																																																																											1
AGGGCG/CCCTCG	1																																																																																											1
ATGGCC/ATGGCC	1																																																																																											1
