Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-143/megassr/results/hub_GCF_053847485.1/fasta/hub_GCF_053847485.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              207
Total size of examined sequences (bp):           6637646
Total number of identified SSRs:                 60
Number of SSR containing sequences:              41
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	9
2	1
3	10
4	1
5	11
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1			1																																																								2
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1															1																																																2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1		1					1																																														1							1	5
GC	-	-	-	1																																																																															1
AGA	-	-	1																																																																																1
CGC	-	-	2																																																																																2
CGG	-	-	1																																																																																1
GCC	-	-	1																																																																																1
GCG	-	-	2																																																																																2
GGT	-	-	1																																																																																1
GTG	-	-	1	1																																																																															2
CTGG	-	1																																																																																	1
CAGCG	1																																																																																		1
CGCCG	2																																																																																		2
CGGCG	1																																																																																		1
CTCGC	1																																																																																		1
GCCGC	1																																																																																		1
GCGCG	1																																																																																		1
GCGGC	2																																																																																		2
GGCGC	1																																																																																		1
GGTGG	1																																																																																		1
AAGGCC	1																																																																																		1
ACAGCG	1																																																																																		1
ACCGCC	1																																																																																		1
AGCGCC	1																																																																																		1
ATGGCC	1																																																																																		1
CAACGC			1																																																																																1
CAGGAA	1																																																																																		1
CAGGCG	1																																																																																		1
CCCCTT	1																																																																																		1
CCGAGC		1								1																																																																									2
CCTCGG	1																																																																																		1
CCTGAC	1																																																																																		1
CGCCCT	1																																																																																		1
CGCCGA	1																																																																																		1
CGCTGG	1																																																																																		1
CGGTGG	1																																																																																		1
CGTGAT			1																																																																																1
CGTGTT		1																																																																																	1
CTGGCG	1																																																																																		1
GCCCTG	1																																																																																		1
GCGCCA	1																																																																																		1
GCGCCG	1																																																																																		1
GGCCCA	1																																																																																		1
GGCGCT	1																																																																																		1
GGGACA	1																																																																																		1
TGCTGG		1																																																																																	1
TGGCTG										1																																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1			1																																																								2
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1		1		1					1						1																																								1							1	7
CG/CG	-	-	-	1																																																																															1
AAG/CTT	-	-	1																																																																																1
ACC/GGT	-	-	2	1																																																																															3
CCG/CGG	-	-	6																																																																																6
AGCC/CTGG	-	1																																																																																	1
ACCCC/GGGGT	1																																																																																		1
AGCGC/CGCTG	1																																																																																		1
AGGCG/CCTCG	1																																																																																		1
CCGCG/CGCGG	8																																																																																		8
AACACG/CGTGTT		1																																																																																	1
AACAGG/CCTGTT	1																																																																																		1
AACGCC/CGTTGG			1																																																																																1
AAGGCC/CCTTGG	1																																																																																		1
AAGGGG/CCCCTT	1																																																																																		1
ACAGCC/CTGTGG										1																																																																									1
ACAGCG/CGCTGT	1																																																																																		1
ACAGGG/CCCTGT	1																																																																																		1
ACCAGC/CTGGTG		1																																																																																	1
ACCCTG/AGGGTC	1																																																																																		1
ACCGCC/CGGTGG	2																																																																																		2
ACGATC/ATCGTG			1																																																																																1
ACGCCG/CGGCGT	1																																																																																		1
AGCCCG/CGGGCT		1								1																																																																									2
AGCGCC/CGCTGG	5																																																																																		5
AGGCCC/CCTGGG	1																																																																																		1
AGGCCG/CCTCGG	1																																																																																		1
AGGCGC/CCTGCG	1																																																																																		1
AGGGCC/CCCTGG	1																																																																																		1
AGGGCG/CCCTCG	1																																																																																		1
ATGGCC/ATGGCC	1																																																																																		1
CCGGCG/CCGGCG	1																																																																																		1
