Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-142/megassr/results/hub_GCF_053847345.1/fasta/hub_GCF_053847345.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              198
Total size of examined sequences (bp):           6631200
Total number of identified SSRs:                 74
Number of SSR containing sequences:              49
Number of sequences containing more than 1 SSR:  20
Number of SSRs present in compound formation:    8


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	21
2	1
3	12
4	1
5	11
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																																																																																															1
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2	1			2		1								1		1			1		1																											1									1																																																					1	14
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						1			1			1				1			1																																																																																													6
GC	-	-	-	1																																																																																																																														1
AGA	-	-	1																																																																																																																															1
CAC	-	-	1	1																																																																																																																														2
CCG	-	-	1																																																																																																																															1
CGC	-	-	3																																																																																																																															3
GAG	-	-	1																																																																																																																															1
GCC	-	-	1																																																																																																																															1
GCG	-	-	1																																																																																																																															1
GGT	-	-	2																																																																																																																															2
CTGG	-	1																																																																																																																																1
CCACC	1																																																																																																																																	1
CGCCG	2																																																																																																																																	2
CGCGC	1																																																																																																																																	1
CGGCG	1																																																																																																																																	1
CTCGC	1																																																																																																																																	1
GCCGC	1																																																																																																																																	1
GCGCG	1																																																																																																																																	1
GCGGC	1																																																																																																																																	1
GGCGC	1																																																																																																																																	1
TGCGC	1																																																																																																																																	1
AAGGCC	1																																																																																																																																	1
ACCGCC	1																																																																																																																																	1
AGCGCC	1																																																																																																																																	1
ATGGCC	1																																																																																																																																	1
CAACGC			1																																																																																																																															1
CAGGCG	1																																																																																																																																	1
CCAGGG	1																																																																																																																																	1
CCCCTT	1																																																																																																																																	1
CCGAGC										1																																																																																																																								1
CCGAGG	1																																																																																																																																	1
CCTGAC	1																																																																																																																																	1
CGCCCT	1																																																																																																																																	1
CGCTGG	1																																																																																																																																	1
CGCTGT	1																																																																																																																																	1
CGGGCT		1																																																																																																																																1
CGGTGG	1																																																																																																																																	1
CGTCGG	1																																																																																																																																	1
CGTGAT											1																																																																																																																							1
CGTGTT		1																																																																																																																																1
GCGCCA	2																																																																																																																																	2
GCGCCG	1																																																																																																																																	1
GGCCCA	1																																																																																																																																	1
GGCGCT	1																																																																																																																																	1
TGCTGG		1																																																																																																																																1
TGGCTG			1																																																																																																																															1
TGTCCC	1																																																																																																																																	1
TGTTCC	1																																																																																																																																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																																																																																															1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	2	1			2	1	1		1			1			1	1	1		1	1		1																											1									1																																																					1	20
CG/CG	-	-	-	1																																																																																																																														1
AAG/CTT	-	-	1																																																																																																																															1
ACC/GGT	-	-	3	1																																																																																																																														4
AGG/CCT	-	-	1																																																																																																																															1
CCG/CGG	-	-	6																																																																																																																															6
AGCC/CTGG	-	1																																																																																																																																1
ACCCC/GGGGT	1																																																																																																																																	1
AGCGC/CGCTG	1																																																																																																																																	1
AGGCG/CCTCG	1																																																																																																																																	1
CCGCG/CGCGG	8																																																																																																																																	8
AACACG/CGTGTT		1																																																																																																																																1
AACAGG/CCTGTT	1																																																																																																																																	1
AACGCC/CGTTGG			1																																																																																																																															1
AAGGCC/CCTTGG	1																																																																																																																																	1
AAGGGG/CCCCTT	1																																																																																																																																	1
ACAGCC/CTGTGG			1																																																																																																																															1
ACAGCG/CGCTGT	1																																																																																																																																	1
ACAGGG/CCCTGT	1																																																																																																																																	1
ACCAGC/CTGGTG		1																																																																																																																																1
ACCCTG/AGGGTC	1																																																																																																																																	1
ACCGCC/CGGTGG	2																																																																																																																																	2
ACGATC/ATCGTG											1																																																																																																																							1
ACGCCG/CGGCGT	1																																																																																																																																	1
AGCCCG/CGGGCT		1								1																																																																																																																								2
AGCGCC/CGCTGG	5																																																																																																																																	5
AGGCCC/CCTGGG	1																																																																																																																																	1
AGGCCG/CCTCGG	1																																																																																																																																	1
AGGCGC/CCTGCG	1																																																																																																																																	1
AGGGCC/CCCTGG	1																																																																																																																																	1
AGGGCG/CCCTCG	1																																																																																																																																	1
ATGGCC/ATGGCC	1																																																																																																																																	1
CCGGCG/CCGGCG	1																																																																																																																																	1
