Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-141/megassr/results/hub_GCF_053847325.1/fasta/hub_GCF_053847325.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              237
Total size of examined sequences (bp):           6633648
Total number of identified SSRs:                 69
Number of SSR containing sequences:              47
Number of sequences containing more than 1 SSR:  15
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	18
2	1
3	10
4	1
5	11
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2	1	1				1			1		1			1																								1																		1	10
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2	1																	1																				1					1														7
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-													1																																														1
GC	-	-	-	1																																																																								1
AGA	-	-	1																																																																									1
CAC	-	-		1																																																																								1
CCG	-	-	1																																																																									1
CGC	-	-	3																																																																									3
GCC	-	-	1																																																																									1
GCG	-	-	1																																																																									1
GGT	-	-	1																																																																									1
GTG	-	-	1																																																																									1
GCCA	-	1																																																																										1
CAGCG	1																																																																											1
CGCCG	1																																																																											1
CGCGC	1																																																																											1
CGGCG	1																																																																											1
GCGCG	1																																																																											1
GCGGC	3																																																																											3
GGCGA	1																																																																											1
GGCGC	1																																																																											1
GGTGG	1																																																																											1
AAGGCC	1																																																																											1
ACAGCG	1																																																																											1
ACCGCC	1																																																																											1
AGCGCC	1																																																																											1
ATCACG			1																																																																									1
ATGGCC	1																																																																											1
CAACGC							1																																																																					1
CAGGAA	1																																																																											1
CAGGCG	1																																																																											1
CCAGGG	1																																																																											1
CCCCTT	1																																																																											1
CCTCGG	1																																																																											1
CCTGAC	1																																																																											1
CCTGGG	1																																																																											1
CGCCCT	1																																																																											1
CGCCGA	1																																																																											1
CGCTGG	1																																																																											1
CGGGCT		1																																																																										1
CGGTGG	1																																																																											1
CGTGTT		1																																																																										1
CTGGCG	1																																																																											1
GCGCCA	1																																																																											1
GCGCCG	1																																																																											1
GGCGCT	1																																																																											1
GGCTCG										1																																																																		1
TGCTGG		1																																																																										1
TGGCTG											1																																																																	1
TGTCCC	1																																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-													1																																														1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	4	2	1				1			1		1			1				1																				2					1													1	17
CG/CG	-	-	-	1																																																																								1
AAG/CTT	-	-	1																																																																									1
ACC/GGT	-	-	2	1																																																																								3
CCG/CGG	-	-	6																																																																									6
AGCC/CTGG	-	1																																																																										1
ACCCC/GGGGT	1																																																																											1
AGCGC/CGCTG	1																																																																											1
AGGCG/CCTCG	1																																																																											1
CCGCG/CGCGG	8																																																																											8
AACACG/CGTGTT		1																																																																										1
AACAGG/CCTGTT	1																																																																											1
AACGCC/CGTTGG							1																																																																					1
AAGGCC/CCTTGG	1																																																																											1
AAGGGG/CCCCTT	1																																																																											1
ACAGCC/CTGTGG											1																																																																	1
ACAGCG/CGCTGT	1																																																																											1
ACAGGG/CCCTGT	1																																																																											1
ACCAGC/CTGGTG		1																																																																										1
ACCCTG/AGGGTC	1																																																																											1
ACCGCC/CGGTGG	2																																																																											2
ACGATC/ATCGTG			1																																																																									1
ACGCCG/CGGCGT	1																																																																											1
AGCCCG/CGGGCT		1								1																																																																		2
AGCGCC/CGCTGG	5																																																																											5
AGGCCC/CCTGGG	1																																																																											1
AGGCCG/CCTCGG	1																																																																											1
AGGCGC/CCTGCG	1																																																																											1
AGGGCC/CCCTGG	1																																																																											1
AGGGCG/CCCTCG	1																																																																											1
ATGGCC/ATGGCC	1																																																																											1
CCGGCG/CCGGCG	1																																																																											1
