Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-140/megassr/results/hub_GCF_053847305.1/fasta/hub_GCF_053847305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              190
Total size of examined sequences (bp):           6635552
Total number of identified SSRs:                 65
Number of SSR containing sequences:              44
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	14
2	1
3	10
4	1
5	11
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1		1	1	2			1									1		1					1		1																																				1																								1	12
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1																1																																																																				2
GC	-	-	-	1																																																																																																					1
AGA	-	-	1																																																																																																						1
CAC	-	-	1	1																																																																																																					2
CCG	-	-	1																																																																																																						1
CGC	-	-	1																																																																																																						1
GCC	-	-	1																																																																																																						1
GCG	-	-	3																																																																																																						3
GTG	-	-	1																																																																																																						1
CTGG	-	1																																																																																																							1
CAGCG	1																																																																																																								1
CCACC	1																																																																																																								1
CGCCG	1																																																																																																								1
CGCGC	1																																																																																																								1
CGGCG	1																																																																																																								1
CTCGC	1																																																																																																								1
GCCGC	1																																																																																																								1
GCGCG	1																																																																																																								1
GCGGC	2																																																																																																								2
GGCGC	1																																																																																																								1
ACAGCG	1																																																																																																								1
ACCGCC	1																																																																																																								1
AGCGCC	1																																																																																																								1
AGGGCG	1																																																																																																								1
ATGGCC	1																																																																																																								1
CAACGC			1																																																																																																						1
CAGGAA	1																																																																																																								1
CAGGCG	1																																																																																																								1
CCAGCG	1																																																																																																								1
CCAGGG	1																																																																																																								1
CCCCTT	1																																																																																																								1
CCTCGG	1																																																																																																								1
CCTGAC	1																																																																																																								1
CGCCGA	1																																																																																																								1
CGCTGG	1																																																																																																								1
CGGCGC	1																																																																																																								1
CGGGCT		1																																																																																																							1
CGGTGG	1																																																																																																								1
CGTGAT											1																																																																																														1
CGTGTT		1																																																																																																							1
CTGGCG	1																																																																																																								1
GCGCCA	1																																																																																																								1
GGCCCA	1																																																																																																								1
GGCCTT	1																																																																																																								1
GGCTCG										1																																																																																															1
TGCTGG		1																																																																																																							1
TGGCTG										1																																																																																															1
TGTCCC	1																																																																																																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1		2	1	2			1									1		2					1		1																																				1																								1	14
CG/CG	-	-	-	1																																																																																																					1
AAG/CTT	-	-	1																																																																																																						1
ACC/GGT	-	-	2	1																																																																																																					3
CCG/CGG	-	-	6																																																																																																						6
AGCC/CTGG	-	1																																																																																																							1
ACCCC/GGGGT	1																																																																																																								1
AGCGC/CGCTG	1																																																																																																								1
AGGCG/CCTCG	1																																																																																																								1
CCGCG/CGCGG	8																																																																																																								8
AACACG/CGTGTT		1																																																																																																							1
AACAGG/CCTGTT	1																																																																																																								1
AACGCC/CGTTGG			1																																																																																																						1
AAGGCC/CCTTGG	1																																																																																																								1
AAGGGG/CCCCTT	1																																																																																																								1
ACAGCC/CTGTGG										1																																																																																															1
ACAGCG/CGCTGT	1																																																																																																								1
ACAGGG/CCCTGT	1																																																																																																								1
ACCAGC/CTGGTG		1																																																																																																							1
ACCCTG/AGGGTC	1																																																																																																								1
ACCGCC/CGGTGG	2																																																																																																								2
ACGATC/ATCGTG											1																																																																																														1
ACGCCG/CGGCGT	1																																																																																																								1
AGCCCG/CGGGCT		1								1																																																																																															2
AGCGCC/CGCTGG	5																																																																																																								5
AGGCCC/CCTGGG	1																																																																																																								1
AGGCCG/CCTCGG	1																																																																																																								1
AGGCGC/CCTGCG	1																																																																																																								1
AGGGCC/CCCTGG	1																																																																																																								1
AGGGCG/CCCTCG	1																																																																																																								1
ATGGCC/ATGGCC	1																																																																																																								1
CCGGCG/CCGGCG	1																																																																																																								1
