Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-139/megassr/results/hub_GCF_053847285.1/fasta/hub_GCF_053847285.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              207
Total size of examined sequences (bp):           6642191
Total number of identified SSRs:                 61
Number of SSR containing sequences:              37
Number of sequences containing more than 1 SSR:  16
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	10
2	1
3	10
4	1
5	11
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1	2						1																																				1																												1																					1	8
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1								1																																																																																									2
GC	-	-	-	1																																																																																																															1
AGA	-	-	1																																																																																																																1
CCG	-	-	1																																																																																																																1
CGC	-	-	1																																																																																																																1
GCC	-	-	1																																																																																																																1
GCG	-	-	3																																																																																																																3
GGT	-	-	1																																																																																																																1
GTG	-	-	1	1																																																																																																															2
CTGG	-	1																																																																																																																	1
CCACC	1																																																																																																																		1
CGCCG	1																																																																																																																		1
CGCGC	1																																																																																																																		1
CGGCG	1																																																																																																																		1
CTCGC	1																																																																																																																		1
GCCGC	1																																																																																																																		1
GCGCG	1																																																																																																																		1
GCGGC	2																																																																																																																		2
GGCGC	1																																																																																																																		1
TGCGC	1																																																																																																																		1
ACAGCG	1																																																																																																																		1
ACCGCC	1																																																																																																																		1
AGGGCG	1																																																																																																																		1
ATGGCC	1																																																																																																																		1
CAGGAA	1																																																																																																																		1
CCAGCA		1																																																																																																																	1
CCAGCG	1																																																																																																																		1
CCCCTT	1																																																																																																																		1
CCGAGC										1																																																																																																									1
CCTCGG	1																																																																																																																		1
CCTGAC	1																																																																																																																		1
CCTGGG	1																																																																																																																		1
CGCTGG	1																																																																																																																		1
CGGGCT		1																																																																																																																	1
CGGTGG	1																																																																																																																		1
CGTCGG	1																																																																																																																		1
CGTGAT											1																																																																																																								1
CGTGTT		1																																																																																																																	1
CTGGCG	1																																																																																																																		1
GCCCTG	1																																																																																																																		1
GCGCCA	1																																																																																																																		1
GCGCCG	1																																																																																																																		1
GCGCCT	1																																																																																																																		1
GGCCTT	1																																																																																																																		1
GGCGCT	1																																																																																																																		1
GGGACA	1																																																																																																																		1
GTTGGC			1																																																																																																																1
TGGCTG			1																																																																																																																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1	1	2			1			1																																				1																												1																					1	10
CG/CG	-	-	-	1																																																																																																															1
AAG/CTT	-	-	1																																																																																																																1
ACC/GGT	-	-	2	1																																																																																																															3
CCG/CGG	-	-	6																																																																																																																6
AGCC/CTGG	-	1																																																																																																																	1
ACCCC/GGGGT	1																																																																																																																		1
AGCGC/CGCTG	1																																																																																																																		1
AGGCG/CCTCG	1																																																																																																																		1
CCGCG/CGCGG	8																																																																																																																		8
AACACG/CGTGTT		1																																																																																																																	1
AACAGG/CCTGTT	1																																																																																																																		1
AACGCC/CGTTGG			1																																																																																																																1
AAGGCC/CCTTGG	1																																																																																																																		1
AAGGGG/CCCCTT	1																																																																																																																		1
ACAGCC/CTGTGG			1																																																																																																																1
ACAGCG/CGCTGT	1																																																																																																																		1
ACAGGG/CCCTGT	1																																																																																																																		1
ACCAGC/CTGGTG		1																																																																																																																	1
ACCCTG/AGGGTC	1																																																																																																																		1
ACCGCC/CGGTGG	2																																																																																																																		2
ACGATC/ATCGTG											1																																																																																																								1
ACGCCG/CGGCGT	1																																																																																																																		1
AGCCCG/CGGGCT		1								1																																																																																																									2
AGCGCC/CGCTGG	5																																																																																																																		5
AGGCCC/CCTGGG	1																																																																																																																		1
AGGCCG/CCTCGG	1																																																																																																																		1
AGGCGC/CCTGCG	1																																																																																																																		1
AGGGCC/CCCTGG	1																																																																																																																		1
AGGGCG/CCCTCG	1																																																																																																																		1
ATGGCC/ATGGCC	1																																																																																																																		1
CCGGCG/CCGGCG	1																																																																																																																		1
